Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0705
         (692 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J04973-1|AAA35710.1|  453|Homo sapiens protein ( Human cytochrom...    38   0.034
BC003136-1|AAH03136.1|  453|Homo sapiens ubiquinol-cytochrome c ...    38   0.034
BC000484-1|AAH00484.1|  453|Homo sapiens UQCRC2 protein protein.       38   0.034

>J04973-1|AAA35710.1|  453|Homo sapiens protein ( Human cytochrome
           bc-1 complex core protein II mRNA, complete cds. ).
          Length = 453

 Score = 37.9 bits (84), Expect = 0.034
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 36  STYYGGELRKEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXXGNGPVTKWGADNS 203
           + Y GGE+R++ G  L H A   + A AGS +           G GP  K G++ +
Sbjct: 251 ANYRGGEIREQNGDSLVHAAFVAESAVAGSAEANAFSVLQHVLGAGPHVKRGSNTT 306



 Score = 35.1 bits (77), Expect = 0.24
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = +2

Query: 230 RPIRSGRIHVSYSDNGLFGVV----LSVPKDEXXXXXXXXXXXXXTSLSADAIKAGKNQL 397
           +P      + SYSD+GLFG+      +   D               +LS   ++A KN+L
Sbjct: 319 QPFDVSAFNASYSDSGLFGIYTISQATAAGDVIKAAYNQVKRIAQGNLSNTDVQAAKNKL 378

Query: 398 KTQVLNEADTGSSLAESLAAQGLYTGS 478
           K   L   ++     E + +Q L  GS
Sbjct: 379 KAGYLMSVESSECFLEEVGSQALVAGS 405



 Score = 34.3 bits (75), Expect = 0.42
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 502 QGFDQISNNDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 621
           Q  D ++N DI  A       + S+ A GNL   P++DEL
Sbjct: 414 QQIDSVANADIINAAKKFVSGQKSMAASGNLGHTPFVDEL 453


>BC003136-1|AAH03136.1|  453|Homo sapiens ubiquinol-cytochrome c
           reductase core protein II protein.
          Length = 453

 Score = 37.9 bits (84), Expect = 0.034
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 36  STYYGGELRKEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXXGNGPVTKWGADNS 203
           + Y GGE+R++ G  L H A   + A AGS +           G GP  K G++ +
Sbjct: 251 ANYRGGEIREQNGDSLVHAAFVAESAVAGSAEANAFSVLQHVLGAGPHVKRGSNTT 306



 Score = 35.1 bits (77), Expect = 0.24
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = +2

Query: 230 RPIRSGRIHVSYSDNGLFGVV----LSVPKDEXXXXXXXXXXXXXTSLSADAIKAGKNQL 397
           +P      + SYSD+GLFG+      +   D               +LS   ++A KN+L
Sbjct: 319 QPFDVSAFNASYSDSGLFGIYTISQATAAGDVIKAAYNQVKTIAQGNLSNTDVQAAKNKL 378

Query: 398 KTQVLNEADTGSSLAESLAAQGLYTGS 478
           K   L   ++     E + +Q L  GS
Sbjct: 379 KAGYLMSVESSECFLEEVGSQALVAGS 405



 Score = 34.3 bits (75), Expect = 0.42
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 502 QGFDQISNNDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 621
           Q  D ++N DI  A       + S+ A GNL   P++DEL
Sbjct: 414 QQIDSVANADIINAAKKFVSGQKSMAASGNLGHTPFVDEL 453


>BC000484-1|AAH00484.1|  453|Homo sapiens UQCRC2 protein protein.
          Length = 453

 Score = 37.9 bits (84), Expect = 0.034
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 36  STYYGGELRKEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXXGNGPVTKWGADNS 203
           + Y GGE+R++ G  L H A   + A AGS +           G GP  K G++ +
Sbjct: 251 ANYRGGEIREQNGDSLVHAAFVAESAVAGSAEANAFSVLQHVLGAGPHVKRGSNTT 306



 Score = 35.1 bits (77), Expect = 0.24
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = +2

Query: 230 RPIRSGRIHVSYSDNGLFGVV----LSVPKDEXXXXXXXXXXXXXTSLSADAIKAGKNQL 397
           +P      + SYSD+GLFG+      +   D               +LS   ++A KN+L
Sbjct: 319 QPFDVSAFNASYSDSGLFGIYTISQATAAGDVIKAAYNQVKTIAQGNLSNTDVQAAKNKL 378

Query: 398 KTQVLNEADTGSSLAESLAAQGLYTGS 478
           K   L   ++     E + +Q L  GS
Sbjct: 379 KAGYLMSVESSECFLEEVGSQALVAGS 405



 Score = 34.3 bits (75), Expect = 0.42
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 502 QGFDQISNNDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 621
           Q  D ++N DI  A       + S+ A GNL   P++DEL
Sbjct: 414 QQIDSVANADIINAAKKFVSGQKSMAASGNLGHTPFVDEL 453


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,283,738
Number of Sequences: 237096
Number of extensions: 1559423
Number of successful extensions: 2867
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2867
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)