Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0705
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02090.2 68416.m00175 mitochondrial processing peptidase beta...    32   0.41 
At3g02090.1 68416.m00174 mitochondrial processing peptidase beta...    32   0.41 
At5g47680.1 68418.m05886 expressed protein contains Pfam profile...    29   2.2  
At3g16480.1 68416.m02103 mitochondrial processing peptidase alph...    29   3.9  
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph...    28   5.1  
At5g53890.1 68418.m06703 leucine-rich repeat transmembrane prote...    28   6.8  
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    28   6.8  
At1g75750.1 68414.m08798 gibberellin-regulated protein 1 (GASA1)...    28   6.8  
At2g34220.1 68415.m04187 hypothetical protein contains Pfam prof...    27   8.9  

>At3g02090.2 68416.m00175 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 535

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +2

Query: 254 HVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXXTSLS---ADA-IKAGKNQLKTQVLNEA 421
           + +Y D GLFG V +V K +             T L+   +DA +   +NQLK+ +L   
Sbjct: 396 NTNYKDTGLFG-VYAVAKADCLDDLSYAIMYEVTKLAYRVSDADVTRARNQLKSSLLLHM 454

Query: 422 DTGSSLAESLAAQGLYTG 475
           D  S +AE +  Q L  G
Sbjct: 455 DGTSPIAEDIGRQLLTYG 472


>At3g02090.1 68416.m00174 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 531

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +2

Query: 254 HVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXXTSLS---ADA-IKAGKNQLKTQVLNEA 421
           + +Y D GLFG V +V K +             T L+   +DA +   +NQLK+ +L   
Sbjct: 396 NTNYKDTGLFG-VYAVAKADCLDDLSYAIMYEVTKLAYRVSDADVTRARNQLKSSLLLHM 454

Query: 422 DTGSSLAESLAAQGLYTG 475
           D  S +AE +  Q L  G
Sbjct: 455 DGTSPIAEDIGRQLLTYG 472


>At5g47680.1 68418.m05886 expressed protein contains Pfam profile
           PF04243: Protein of unknown function (DUF425)
          Length = 344

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 646 KLRFNTEFTIHLYREQMLSFQQRQLKSCSLPHSRQPARCHYWISG 512
           K+  + +F  HL  E  +S   +Q+  C   + R  + CH W++G
Sbjct: 119 KIVVDVDFA-HLMSESEISSLVQQIMYCYAVNGRSTSPCHLWLTG 162


>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 499

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 36  STYYGGELRKEIGGDLAHVALAVQ 107
           S Y GG+ R+  GG+  H ALA +
Sbjct: 288 SQYVGGDFRQHTGGEATHFALAFE 311


>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 503

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 27  AEASTYYGGELRKEIGGDLAHVALAVQ 107
           A  S Y GG+ R+  GG+  H A+A +
Sbjct: 289 APKSQYVGGDFRQHTGGEATHFAVAFE 315


>At5g53890.1 68418.m06703 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1036

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -1

Query: 551 FETACEMSLLDIWSNPWRCQQQSEQSRCISLALLMIRQATILCRLHLTLVSSTDFCPL 378
           F    ++  LD+ SN +  +     S+C  L +L +R  ++   ++L     TD C L
Sbjct: 276 FGNLTQLEHLDVSSNKFSGRFPPSLSQCSKLRVLDLRNNSLSGSINLNFTGFTDLCVL 333


>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (ATHIM)
            identical to SP|P34881 DNA (cytosine-5)-methyltransferase
            AthI (EC 2.1.1.37) {Arabidopsis thaliana}
          Length = 1534

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 101  SKGNMSQIPSNFLP*FSTI 45
            SKG++ Q+P+N  P FSTI
Sbjct: 1041 SKGSLKQLPANMKPKFSTI 1059


>At1g75750.1 68414.m08798 gibberellin-regulated protein 1 (GASA1) /
           gibberellin-responsive protein 1 identical to SP|P46689
           Gibberellin-regulated protein 1 precursor {Arabidopsis
           thaliana}; supporting cDNA
           gi|887938|gb|U11766.1|ATU11766
          Length = 98

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 430 IVACRIISSARLIHRLCSLCC 492
           +  CR+    RL HR C  CC
Sbjct: 45  VARCRLSRRPRLCHRACGTCC 65


>At2g34220.1 68415.m04187 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 718

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 531 HLAGCLECGKEQDFNWRCWKLSICS 605
           H   C+      +  WRCWK  ICS
Sbjct: 232 HFQKCIPIAN--NLRWRCWKCHICS 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,308,578
Number of Sequences: 28952
Number of extensions: 221933
Number of successful extensions: 507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)