Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0702
         (623 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   1.6  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    21   8.4  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   8.4  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 617 IRTRNKIKYKNRLVK*NLFINEIYAKILTVVFKLFNI*HFKKSY 486
           IR +N + Y NR+   N+    I+    T+++   N+    K Y
Sbjct: 142 IRLKNCVIYFNRIFGWNILFGHIFTVCRTLIYIDDNVKGLGKQY 185


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 258 ACPDCVNTGAGGCKETIKVKPRRV 187
           A PD +++G   C E  K   R++
Sbjct: 66  ALPDALHSGCSKCTEKQKEGSRKI 89


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +2

Query: 200 FTFMVSLHPPAPVLTQSGHASGITVSNCPDFQGRRRLR 313
           ++ + + +P      +     GITVS   ++ G +R+R
Sbjct: 250 YSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIR 287


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,151
Number of Sequences: 336
Number of extensions: 3064
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)