Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0702
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   1.7  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    27   2.9  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   3.8  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   5.1  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   8.9  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 139 PQDRLLRTPRFSRMATDPSWLHFYGLFAPPGT 234
           PQ+    TP+ S  AT  S L   G FAPP T
Sbjct: 431 PQESATATPKRSPSATPTSALPPIGKFAPPTT 462


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 214 LFAPPGTRINAVRARKWDHSLQLSRFPG 297
           L+ PPGT I  + A + + SL+  + PG
Sbjct: 115 LYVPPGTVIREISAVRSEQSLEWVQMPG 142


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 215 SLHPPAPVLTQSGHASGITVSNCPDFQGRRRLRVCEF*VQKRTG 346
           S H P  V +Q  H++G  ++N      +RRL   +F   +R G
Sbjct: 622 SFHYPVSVDSQLSHSTGSLMANFSSPTKKRRLESVDFIFLQRKG 665


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 169 FSRMATDPSWLHFYGLFAPPGTRINAVRA 255
           FS   T+  W HFY LF+   T  +A+ A
Sbjct: 393 FSSTETNVPWYHFYSLFSLRDTDWSALLA 421


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 240  NTGAGGCKETIKVKPRRVGCHTRESRSTQQPV 145
            N   G C  ++ V  R+V    R SR+  QPV
Sbjct: 1100 NNLVGVCVLSVDVPNRKVALSARNSRTQSQPV 1131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,147
Number of Sequences: 5004
Number of extensions: 45524
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)