Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0702
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0076 - 18861629-18861862,18862421-18862532,18863001-18863146     30   1.7  
06_01_1092 + 8966584-8967053,8967737-8967854,8968030-8968253,896...    29   3.0  
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751...    29   4.0  
12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998     28   6.9  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    27   9.2  
06_02_0011 - 10569471-10572245                                         27   9.2  

>11_05_0076 - 18861629-18861862,18862421-18862532,18863001-18863146
          Length = 163

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 156 QQPVLGTNKPDAQIRSATGFNICTTSRHHGYSSEREHNTELHLVN 22
           QQP+L T+  DA    A         R +  S+ ++HN EL L+N
Sbjct: 103 QQPLLTTSGLDAATNCARAVPSFDRDRPNFLSTSKKHNHELQLIN 147


>06_01_1092 +
           8966584-8967053,8967737-8967854,8968030-8968253,
           8968352-8968588,8969122-8969275,8969356-8969438,
           8969573-8969687,8969837-8969909,8970005-8970147
          Length = 538

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -3

Query: 291 KSGQLETVIPLACPDCVNTGAGGCKETIKVKPRRVGCHTRESRSTQQPVLGTNKPDAQ 118
           + G+   ++PL  P     GA G +    VKP   G   RE+ S   P+ G   PD Q
Sbjct: 103 EEGRSSFLLPLY-PKSSGGGAAG-ESAGSVKPDGAGAEARENSSALLPIRGNVFPDGQ 158


>12_02_1035 - 25570009-25571241,25571940-25573709,25573797-25575118,
            25575208-25575555,25576540-25576633
          Length = 1588

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 25/95 (26%), Positives = 40/95 (42%)
 Frame = -3

Query: 399  KSLALTVPKFPSXK*ILGPVRF*TQNSQTRSLRRPWKSGQLETVIPLACPDCVNTGAGGC 220
            K L+ T+    S    +G  R  T    T+ L+   KS Q  TV      +  + G    
Sbjct: 973  KELSKTMSICDSSGSEIGAGRRRTMRRDTKLLKSGRKSQQESTVNIEQRKEIDHAGLEKS 1032

Query: 219  KETIKVKPRRVGCHTRESRSTQQPVLGTNKPDAQI 115
             E ++ K  ++    +  RS +QPV+     DA+I
Sbjct: 1033 NELLREKLHKLQSEVQALRSKEQPVIDVKSCDAEI 1067


>12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998
          Length = 375

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 227 PAPVLTQSGHASGITVSNCPDFQGRRRLRVCEF 325
           P P L  S H +G   S+CP   G++ +++C F
Sbjct: 152 PNPHLYYSCHNTGHISSHCPLLLGKKGIKLCGF 184


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 418 SHEKTLKIISTHRPQISKX*VNPRPGAFLNSK 323
           SH KTLK+I T   +  +      PGAF NSK
Sbjct: 296 SHSKTLKLICTLNCKSVEEEQAHNPGAFSNSK 327


>06_02_0011 - 10569471-10572245
          Length = 924

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -3

Query: 111 SATGFNICTTSRHHGYSSEREHNTELHLVNKN 16
           SATG+ + ++SR +G+S+  +HN +  +V  N
Sbjct: 353 SATGWMLSSSSRRNGFSN-GDHNHDTEIVGTN 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,250,351
Number of Sequences: 37544
Number of extensions: 321256
Number of successful extensions: 818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)