Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0702
         (623 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL356414-2|CAH72893.1|  113|Homo sapiens protein ( Human DNA seq...    31   4.4  

>AL356414-2|CAH72893.1|  113|Homo sapiens protein ( Human DNA
           sequence from clone RP11-352D3 on chromosome 20 Contains
            the RPL21P2 gene for ribosomal protein L21 pseudogene 2
           and a novel ytic subribosomal protein L21 pseudogene 2).
          Length = 113

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 100 SGSRSNLSVGFIGPQDRLLRTPRFSRMATDPSWLHFY 210
           S  RS L VG IGP    L+ P  +++ + P+W  F+
Sbjct: 54  SRRRSALVVGTIGPGHGRLQDPSCTKLPSPPAWFPFF 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,962,010
Number of Sequences: 237096
Number of extensions: 1842114
Number of successful extensions: 7218
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 7115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7218
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)