Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0702
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13590.1 68416.m01711 DC1 domain-containing protein contains ...    29   3.3  
At1g54890.1 68414.m06267 late embryogenesis abundant protein-rel...    28   4.4  
At1g22275.1 68414.m02784 expressed protein                             28   4.4  
At1g23500.1 68414.m02950 GDSL-motif lipase, putative similar to ...    28   5.8  

>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 513

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -2

Query: 466 CNKHFVPDCTTCYAYRSHEKTLKIISTHRP 377
           C  HF  DC T    + HE TL  I    P
Sbjct: 70  CRSHFHKDCLTIINAKIHEHTLTFIRRENP 99


>At1g54890.1 68414.m06267 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein (EMB7) GI:1350543 from
           [Picea glauca]
          Length = 347

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 181 ATDPSWLHFYGLFAPPGTR---INAVRARKWDHSL 276
           A D +W+   GL   P ++   + A +A KWDH +
Sbjct: 139 ARDFTWIQSLGLIFGPNSKTFSLEATKAEKWDHQV 173


>At1g22275.1 68414.m02784 expressed protein
          Length = 856

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -3

Query: 243 VNTGAGGCKETIKVKPRRVGCHTRESRSTQQPVLGTNKPDAQIRSATG-FNICTTSRHHG 67
           VN+       ++KVK  R+G + R    T+ P +      A++ S +      T  +HH 
Sbjct: 719 VNSNKDYSHSSVKVKESRLGGNKRSEHITESPFV-----KAKVTSVSNILKEATNPKHHS 773

Query: 66  YSSEREHNTE 37
             + RE+  E
Sbjct: 774 KVTHREYEVE 783


>At1g23500.1 68414.m02950 GDSL-motif lipase, putative similar to
           family II lipase EXL6 (GI:15054390), EXL4 (GI:15054388)
           [Arabidopsis thaliana]; contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 345

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +2

Query: 86  VQMLNPVADLI*---ASGLLVPRTGCCVLRDSLVWQPTRRGFTFMVSLHP 226
           V M NP+ +LI    ASG +    GCC +  S V  P    + F    HP
Sbjct: 275 VDMYNPLLNLINNPRASGFIDVADGCCCMPTSPVPCPDASQYVFWDFAHP 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,214,120
Number of Sequences: 28952
Number of extensions: 247640
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)