Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0701
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   4.1  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   4.1  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   5.4  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   7.1  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   7.1  
SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom...    24   9.4  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    24   9.4  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -2

Query: 449 PQWQG-QPRPRGTPGTRHQRALG*GPQWRGQPRSQGLH*VPRQQLPG 312
           PQ  G QP+  G P    QR  G  PQ  G P   G    P   LPG
Sbjct: 741 PQRTGMQPQMTGGP-MLPQRTGGMAPQPTGMPGQWGFINTPLSNLPG 786


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 369 AGSATI-TGATLGPSATITGLGTMMAGSAMITGETAGFS*HLIVQ 238
           AG  T+  G  LG     T LGT++  + MIT    GF   + +Q
Sbjct: 199 AGLGTLFAGLGLGTMIGATYLGTLITSAPMITALFGGFGAKMSMQ 243


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 313 ARYYDGRISNDHGRNSRLFLTFDC 242
           AR + G+I+N  G+    F+ +DC
Sbjct: 399 ARKHPGKINNLRGKGKGTFIAWDC 422


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/51 (23%), Positives = 20/51 (39%)
 Frame = -3

Query: 430  HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDH 278
            +  GGH+G+          NG  + +H    R  G  Y+   Y+    N +
Sbjct: 940  NSRGGHEGYGGRSRGGGYSNGPPAGNHYSSNRGKGYGYQRESYNNNNRNGY 990


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 94  SVLP*SKLPSSHPQSTSDTSFL 159
           S +P  +LPSS+P  +SD S++
Sbjct: 10  STVPGDELPSSYPVFSSDFSYI 31


>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 79

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 448 HNGRVSHDHGGHQGHVTNVHWARGHNGGVS 359
           H G V  +H  + G+V   + A  HN  VS
Sbjct: 35  HEGEVGEEHQKNTGNVRGGYKAAMHNPNVS 64


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 430 HDHGGHQGHVTNVHWARGHNGGVSH 356
           H   G   +VT+  WAR  + G SH
Sbjct: 542 HGKFGSLNYVTSSTWARQEHNGFSH 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,319,834
Number of Sequences: 5004
Number of extensions: 21720
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)