Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0701
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0141 - 937428-937717,938483-938705 32 0.24
12_02_0306 + 17307166-17309091 29 1.3
06_03_0339 - 19687749-19690805 29 1.3
02_05_1332 + 35758657-35758728,35758959-35760689 29 1.7
09_06_0287 + 22047404-22048409,22048754-22049967 28 3.0
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 28 3.0
09_06_0195 - 21477817-21478119,21478216-21478366,21478459-214786... 28 4.0
06_03_0500 + 21470681-21470952,21471049-21471089,21472322-214724... 27 7.0
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 7.0
05_01_0214 - 1615519-1616775 27 7.0
07_03_1732 + 29109612-29110623,29110712-29110786,29111176-291113... 27 9.2
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 27 9.2
02_05_0878 + 32437136-32437522 27 9.2
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 31.9 bits (69), Expect = 0.24
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -3
Query: 439 RVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRL 260
++SH HG H G+ GH+GG+ H G+ L + + G HG + L
Sbjct: 100 KLSHGHG-HGGYGYG-----GHHGGLFGGHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGL 153
Query: 259 F 257
F
Sbjct: 154 F 154
>12_02_0306 + 17307166-17309091
Length = 641
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 387 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 286
G+G T+ G GA +G S T G GT+ G A
Sbjct: 473 GVGVTLVGVGAWAGADVGSSLTEGGGGTLCGGDA 506
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 387 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 286
G+G T+ G GA +G S T G GT+ G A
Sbjct: 206 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGA 239
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 387 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 286
G+G T+ G GA +G S T G GT+ G A
Sbjct: 357 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGA 390
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 387 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 286
G+G T+ G GA +G S T G GT+ G A
Sbjct: 95 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 128
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 387 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 286
G+G T+ G GA +G S T G GT+ G A
Sbjct: 397 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 430
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 387 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 286
G+G T G GA +G S T G GT+ G A
Sbjct: 513 GVGETFIGVGAGAGAGVGSSLTGDGGGTLCGGGA 546
>06_03_0339 - 19687749-19690805
Length = 1018
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = -3
Query: 436 VSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRLF 257
V + G H HV A G+ G + R + ++ GN+ +A ++ R +F
Sbjct: 262 VHANFGSHNAHVETKRGADGNEAGGLKNKRKFAKATGNSSKA----SSVAGSKKRRKAMF 317
Query: 256 LTFDCSGSTLST 221
+ + S S ST
Sbjct: 318 ESSESSASDTST 329
>02_05_1332 + 35758657-35758728,35758959-35760689
Length = 600
Score = 29.1 bits (62), Expect = 1.7
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = -3
Query: 424 HGGHQGHVTNVHWARGHNGGVSHDHRG-YTRS-LGNNYRARYYDGRISNDHGRNSRLFLT 251
H G N+ GH+ G+ HD +G Y S + NYR G ++G F+
Sbjct: 141 HNGKTAQKQNLTNRAGHSSGIIHDKKGSYMPSGVTKNYRPPPSTGDDLAENGVEMGEFVR 200
Query: 250 FDCSGSTLSTGVA 212
GS + TG A
Sbjct: 201 EPSPGSDVLTGGA 213
>09_06_0287 + 22047404-22048409,22048754-22049967
Length = 739
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -3
Query: 337 RSLGNNYRARYYDGRISNDHGRNSRLFLTFDCSGSTLSTGVALAASLMLI 188
R++ ++ RA Y D G + +L C G ++ GV+ AASL+LI
Sbjct: 306 RNVSSSARAGYV---CDCDAGFHGNPYLATGCQGLSIGVGVSSAASLILI 352
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 72 GHYESTDVGPALVEAPIVPSPVHVGHLVPGQLTP 173
G ++++ P + ++P P H HL PG +P
Sbjct: 68 GSPPASELSPGSLSPVMIPPPRHADHLAPGSPSP 101
>09_06_0195 -
21477817-21478119,21478216-21478366,21478459-21478696,
21478786-21478996,21479162-21479361,21479453-21479545,
21479722-21481093
Length = 855
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 154 TRCPTWTGDGTMGASTRAGPTSV 86
TRC W GDG + + R GP V
Sbjct: 411 TRCLVWAGDGELVDTGRLGPGQV 433
>06_03_0500 +
21470681-21470952,21471049-21471089,21472322-21472485,
21472577-21472679,21472806-21472975,21473766-21474239
Length = 407
Score = 27.1 bits (57), Expect = 7.0
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = -3
Query: 445 NGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYR---ARYYDGRISNDHG 275
NGR H HG GH ++ + G N G S GY G YR A YY +G
Sbjct: 269 NGR--HSHGSGGGHRSSYRGSGGGNSG-SSSSGGY-GGYGGGYRSAAAAYYGSTGYAGYG 324
Query: 274 R 272
R
Sbjct: 325 R 325
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/48 (27%), Positives = 18/48 (37%)
Frame = -3
Query: 448 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARY 305
H H HGGH + H G HD + ++ G N+ Y
Sbjct: 550 HGDHHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQQHSHEAGRNHHRGY 597
>05_01_0214 - 1615519-1616775
Length = 418
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -3
Query: 436 VSHDHGGHQGHVTNVHWARGH-NGGVSHDH 350
+ HDHG GH + H +GG HDH
Sbjct: 180 LGHDHGHGHGHGHGHGHSHDHDHGGSDHDH 209
>07_03_1732 +
29109612-29110623,29110712-29110786,29111176-29111333,
29111714-29111937,29112136-29112745
Length = 692
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 266 QAFLNI*LFRLDAFNGGSAGSIVDVNKNVDE-RGKLSRNE 150
Q+ L L +L+AF+ S +D+ KN+DE + + SR +
Sbjct: 653 QSSLMAFLEKLEAFSAVSLQKYIDLQKNIDEAKDRFSRED 692
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -3
Query: 433 SHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNS 266
+ D G + N + G HD RGY++ + R++Y DG +D+ R S
Sbjct: 468 NRDRGNQKHEDYNRYCKPGERSSSRHDDRGYSK---HESRSKYRDG--DDDYRRQS 518
>02_05_0878 + 32437136-32437522
Length = 128
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 439 RVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRS 332
R +H GG G ++ H R H GG SH H Y+ S
Sbjct: 86 RETHAAGGGGGGSSSPH--RVHAGGGSHHHHHYSFS 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,896,541
Number of Sequences: 37544
Number of extensions: 188642
Number of successful extensions: 769
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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