Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0701
(450 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55) 32 0.19
SB_11359| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5) 30 0.77
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 30 1.0
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 29 2.3
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_9681| Best HMM Match : IncA (HMM E-Value=0.58) 28 3.1
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 28 3.1
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 28 4.1
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9) 28 4.1
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16) 28 4.1
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_13265| Best HMM Match : IncA (HMM E-Value=0.32) 27 5.4
SB_19891| Best HMM Match : Keratin (HMM E-Value=0.96) 27 5.4
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_58446| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12) 27 7.2
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_26478| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7.6e-10) 27 7.2
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 27 7.2
SB_59546| Best HMM Match : Collagen (HMM E-Value=0.003) 27 7.2
SB_40325| Best HMM Match : Herpes_US9 (HMM E-Value=1.9) 27 7.2
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 27 9.5
>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
Length = 910
Score = 32.3 bits (70), Expect = 0.19
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 424 HGGHQGHVTNVHWARGHNGGV-SHDHRGYTRSLGNNYR 314
+G HQGH+ N +GH G V +++H TRS G Y+
Sbjct: 777 YGAHQGHMCNGLPEKGHYGDVGAYEHAMDTRSPGYPYK 814
>SB_11359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 30.7 bits (66), Expect = 0.58
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = -3
Query: 376 HNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRLFLTFDCSGSTLSTGVALAAS 200
H+G V HD T G AR+Y+ ++ HGR +L+LT G L V A++
Sbjct: 120 HHGTVRHDTVKNTEHHGT---ARHYNDNGTSWHGRRRQLYLTCIQQGKILGFEVGAAST 175
>SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)
Length = 442
Score = 30.3 bits (65), Expect = 0.77
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +3
Query: 111 EAPIVPSPVHVGHLVPGQLTPLVHILININDAASATPVESVEPEQSN 251
+ PI P P + + G L +++++ND +A PVE+V+ +Q++
Sbjct: 348 KGPISPDPA-IMEEIDGLSNTLDDLILSLNDVDTAEPVENVDIDQAD 393
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 165 LTPLVHILININDAASATPVESVEPEQSNVKK 260
LT H+LIN+ND PV S QS VK+
Sbjct: 597 LTDTSHLLINVNDINDNPPVFSPSAYQSRVKE 628
>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 29.5 bits (63), Expect = 1.3
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Frame = -3
Query: 445 NGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDH 278
+G DHGG H G + R +GG DH G R G R GR DH
Sbjct: 6 HGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGR---DH 62
Query: 277 GRNSR 263
G R
Sbjct: 63 GGTGR 67
Score = 29.1 bits (62), Expect = 1.8
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Frame = -3
Query: 445 NGRVSHDHGGHQ---GHVTNVHWARGHN-GGVSHDHRGYTRSLGNNYRARYYDGRISNDH 278
+G DHGG + G H G + GG DH G R G R GR DH
Sbjct: 13 HGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDHGGTGR---DH 69
Query: 277 GRNSR 263
G R
Sbjct: 70 GGTGR 74
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -3
Query: 424 HGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 269
HG GH H N G SH++ G++ N+ + + G ++HG +
Sbjct: 309 HGHSHGHSHENHGHSHENHGHSHENHGHSHE--NHGHSHKHHGHSHDNHGHS 358
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 445 NGRVSHDHGG--HQGHVTNVHWARGHNGGVSHDHRGYTR 335
+GR++ GG H+++ RG GGVS H G+ R
Sbjct: 1059 HGRLTRGDGGGASSAHISHGRLTRGDGGGVSSAHIGHGR 1097
>SB_9681| Best HMM Match : IncA (HMM E-Value=0.58)
Length = 215
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 387 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT-GETAGFS*H 250
G+G +++G + G L A + G+G + AG+ +++ G T S H
Sbjct: 78 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVVSRGLTTKVSKH 124
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -3
Query: 430 HDHGGHQGHVTNVHWA-RGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 263
H HGG + T+ H + H+ H HR + + + GR ++DH R
Sbjct: 417 HGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHEMR 473
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -3
Query: 430 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHG 275
H HGG G+ + GH GG H H G G+ + DG HG
Sbjct: 129 HAHGGGPGYGGDYGGGLGHCGGPGHGH-GPGHGHGHGAGLVHGDGGPGPGHG 179
>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
Length = 125
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 430 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 338
HD+GGH H+ GH+ G+ HD+ G+T
Sbjct: 83 HDYGGHD------HYDGGHHDGMHHDY-GHT 106
>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 445 NGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 341
+G SHD G H + + GH+G SHD G+
Sbjct: 5 DGVDSHDDDGDDSHDDDGDDSHGHDGVESHDGYGF 39
>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
Length = 3999
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Frame = -3
Query: 445 NGRVSHDHGGHQGHVTNVH---WARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDH 278
NG + GH+ N H A GH ++ H T + N A ++ +N H
Sbjct: 20 NGHENMTANGHENMTANSHENMTANGHENMTANGHENMTANGHENMTANGHENMTANSH 78
>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2429
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = -3
Query: 397 NVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRLFLTFDCSGSTLSTG 218
N+ W + G V HD GY R + G S NS ++ + TL TG
Sbjct: 63 NITWKQIKFGSVFHDSYGYPYGQPRLNRTEFPPGYRSAAGKCNSSGYVAVEFKTKTLVTG 122
Query: 217 VA 212
+A
Sbjct: 123 IA 124
>SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)
Length = 339
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 387 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT 277
G+G +++G + G L A + G+G + AG+ +++
Sbjct: 202 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVVS 238
>SB_19891| Best HMM Match : Keratin (HMM E-Value=0.96)
Length = 209
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 387 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT 277
G+G +++G + G L A + G+G + AG+ +++
Sbjct: 94 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGIVS 130
>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1265
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 433 SHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRS 332
S H H+G VTN ++ DHRG RS
Sbjct: 831 SDSHRDHRGVVTNDRYSYYGRSDYQRDHRGLRRS 864
>SB_58446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 448 HNGRVSHDHGGHQGHVTNVH-WARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDH 278
H+G++ H H G + H W H+G + H + + + A ++DG+I H
Sbjct: 97 HDGKIQGFHAWHNGKIQGFHTW---HDGKIQGFHAWHDGKI-QGFHA-WHDGKIQGFH 149
>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
Length = 1290
Score = 27.1 bits (57), Expect = 7.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 418 GHQGHVTNVHWARGH 374
GH+G V +HW +GH
Sbjct: 1128 GHKGQVHPIHWHKGH 1142
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 440 QGQPRPRGTPGTRHQRALG*GPQWRGQPRSQG 345
+GQP P G+PG +R G P +G+ + G
Sbjct: 32 RGQPGPEGSPGLPGERGTGGVPGPKGKQGAPG 63
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = -3
Query: 421 GGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 263
GG+ G + +W R G + Y+R G Y Y G G N R
Sbjct: 775 GGYGGPPRDQNWGRDPREGWGGNRDNYSRGGGGGYNRGYGSGGGYGGGGYNKR 827
>SB_26478| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7.6e-10)
Length = 142
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 400 TNVHWARGHNGGVSHDHRGYTRSLGNNY 317
T V WA H G ++H H G + G Y
Sbjct: 107 TQVGWALMHPGRLTHYHEGLPTTWGTRY 134
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 440 QGQPRPRGTPGTRHQRALG*GPQWRGQPRSQG 345
+GQP P G+PG +R G P +G+ + G
Sbjct: 32 RGQPGPEGSPGLPGERGTGGVPGPKGKQGAPG 63
>SB_59546| Best HMM Match : Collagen (HMM E-Value=0.003)
Length = 157
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 449 PQWQGQPRPRGTPGTRHQRALG*GPQWRGQP 357
P +QG P PRG G A GPQW P
Sbjct: 9 PGYQGVPGPRGMQG-EEGPAGNKGPQWVNNP 38
>SB_40325| Best HMM Match : Herpes_US9 (HMM E-Value=1.9)
Length = 227
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 387 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT 277
G+G +++G + G L A + G+G + AG+ +++
Sbjct: 67 GVGVSLSGIRVLIGGPLAGVAGLVGVGVVGAGAGVVS 103
>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1483
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3
Query: 418 GHQGHVTNVHWA 383
GH HVTNV WA
Sbjct: 886 GHSAHVTNVRWA 897
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 26.6 bits (56), Expect = 9.5
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = -3
Query: 442 GRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 263
GR H + H N H+ R H+ +H HR + ++++A + + +NS
Sbjct: 328 GRQRHGLRQSKKHHRNKHY-RHHDR--NHHHRHHHHHHKHHHKAANHHKLSTQKQRKNSD 384
Query: 262 LFLTFDCSGSTLSTGVALAASLM 194
L + D G+ + ALA M
Sbjct: 385 LKMEDDVMGNDVGLAAALAMESM 407
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,950,306
Number of Sequences: 59808
Number of extensions: 206276
Number of successful extensions: 817
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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