Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0701
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.17 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.17 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   2.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.0  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   2.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   3.6  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   4.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   6.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 394  VHWARGHNGGVSHDHRGYT 338
            +HW  GHNGG S    GYT
Sbjct: 1422 LHWKSGHNGGAS--LTGYT 1438


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 394  VHWARGHNGGVSHDHRGYT 338
            +HW  GHNGG S    GYT
Sbjct: 1418 LHWKSGHNGGAS--LTGYT 1434


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 123 VPSPVHVGHLVPGQLTPLVHI 185
           VP P+H G+  P  + P + I
Sbjct: 346 VPVPIHCGNFPPRPMGPWISI 366


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -3

Query: 376 HNGGVSHDHRGYTRSLGNNYRARYYD 299
           +N   ++++  Y  +  NNY+  YY+
Sbjct: 330 NNNNYNNNYNNYNNNNYNNYKKLYYN 355


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 358 HDHRGYTRSLGNNYRARYYD 299
           H++  Y  +  NNY+  YY+
Sbjct: 91  HNNNNYNNNNYNNYKKLYYN 110


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -3

Query: 358 HDHRGYTRSLGNNYRARYYD 299
           +++  Y  +  NNY+  YY+
Sbjct: 335 NNYNNYNNNYNNNYKKLYYN 354


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 361 SHDHRGYTRSLGNNYRARYYD 299
           ++++  Y +   NNYR  YY+
Sbjct: 90  NYNNNNYKKLYCNNYRKLYYN 110


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 310 RYYDGRISNDHGRNSRLFL 254
           RYY  R+SND G  S + L
Sbjct: 268 RYYLERLSNDMGEVSYVSL 286


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 69  RGHYESTDVGPAL 107
           RGH E   VGPA+
Sbjct: 142 RGHIEDDYVGPAM 154


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 224 NGGSAGSIVDVNKNVDERGKLSRN 153
           N     S++D N  VD   +++RN
Sbjct: 296 NSQGPSSVIDTNTGVDYFTQINRN 319


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 310 RYYDGRISNDHGRNSRLFL 254
           RYY  R+SND G  S + L
Sbjct: 268 RYYLERLSNDMGEVSYVSL 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,004
Number of Sequences: 438
Number of extensions: 1753
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)