Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0701
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05510.1 68415.m00583 glycine-rich protein                          35   0.029
At2g05440.2 68415.m00575 glycine-rich protein                          31   0.36 
At2g05440.1 68415.m00574 glycine-rich protein                          31   0.36 
At1g27090.1 68414.m03302 glycine-rich protein                          29   1.1  
At3g63100.1 68416.m07087 glycine-rich protein                          29   1.9  
At5g60780.1 68418.m07626 high-affinity nitrate transporter, puta...    28   3.4  
At1g32560.1 68414.m04018 late embryogenesis abundant group 1 dom...    27   4.4  
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin...    27   7.7  
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin...    27   7.7  

>At2g05510.1 68415.m00583 glycine-rich protein 
          Length = 127

 Score = 34.7 bits (76), Expect = 0.029
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -3

Query: 448 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 317
           H G   H  GGH G   + H   GHNGG  H   GY    G +Y
Sbjct: 44  HGGHGGHGGGGHYGGGGHGHG--GHNGGGGHGLDGYGGGHGGHY 85


>At2g05440.2 68415.m00575 glycine-rich protein
          Length = 154

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -3

Query: 424 HGGHQGHVTNV-HWARGHNGGVSHDHRGY 341
           HGGH GH     H   GHNGG  H   GY
Sbjct: 47  HGGHGGHGGGGGHGHGGHNGGGGHGLDGY 75



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 448 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 356
           H G   H HGGH G     H   G+ GG  H
Sbjct: 53  HGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81


>At2g05440.1 68415.m00574 glycine-rich protein
          Length = 127

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -3

Query: 424 HGGHQGHVTNV-HWARGHNGGVSHDHRGY 341
           HGGH GH     H   GHNGG  H   GY
Sbjct: 47  HGGHGGHGGGGGHGHGGHNGGGGHGLDGY 75



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 448 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 356
           H G   H HGGH G     H   G+ GG  H
Sbjct: 53  HGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81


>At1g27090.1 68414.m03302 glycine-rich protein
          Length = 420

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 442 GRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYTRSLGNNYRARYYDGR 293
           GR     GG  G   N    RG  GG  +  +  Y +S GN Y+  YY+ R
Sbjct: 344 GRRGARRGG--GGYQNGRGGRGGGGGYQNGRYESYDQSGGNGYQRNYYNNR 392


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -3

Query: 430 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 263
           HD+G    H  + H   GH  G  H   G+ R  G+     +  G     HGR+ R
Sbjct: 62  HDYGRDCCHCDHCH---GHGYGHGHREHGHDRGHGHGRGHGHGHGHGHRRHGRDHR 114



 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
 Frame = -3

Query: 448 HNGRVSHDHG-GHQGHVTNVHWARG---HNGGVSHDHRGYTRSLGNNY 317
           H     H HG GH+ H  +    R    H G   H HRG+ R  G  +
Sbjct: 94  HGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGH 141



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 18/62 (29%), Positives = 23/62 (37%)
 Frame = -3

Query: 448 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 269
           H     H H  H GH       RGH  G  H HR + R   +     ++ G   + H R 
Sbjct: 75  HGHGYGHGHREH-GHDRGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGH-GHHHHRG 132

Query: 268 SR 263
            R
Sbjct: 133 HR 134


>At5g60780.1 68418.m07626 high-affinity nitrate transporter,
           putative similar to trans-membrane nitrate transporter
           protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
           high-affinity nitrate transporter ACH1 [Arabidopsis
           thaliana] GI:3608362
          Length = 539

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -2

Query: 449 PQWQGQPRPRGTPGTRHQRALG*GPQWRGQPRSQGLH 339
           PQW        T G R Q     G +W    + QGLH
Sbjct: 469 PQWGSMFLRPSTDGERSQEEYYYGSEWTENEKQQGLH 505


>At1g32560.1 68414.m04018 late embryogenesis abundant group 1
           domain-containing protein / LEA group 1
           domain-containing protein contains Pfam domain, PF03760:
           Late embryogenesis abundant (LEA) group 1
          Length = 134

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 66  KRGHYESTDVGPALVEAPIVPSPVHV-GH 149
           K+ HY  TD GP + +   VP+P  V GH
Sbjct: 74  KQSHYHVTDHGPHVPQQAPVPAPAPVMGH 102


>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; member of the cation diffusion
           facilitator (CDF) family, or cation efflux (CE) family,
           PMID:11500563
          Length = 398

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -3

Query: 436 VSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHG 275
           + HDHG   GH        GH  G  HDH  ++  +       ++D    + HG
Sbjct: 180 LGHDHGHSHGH--------GH--GHGHDHHNHSHGVTVTTHHHHHDHEHGHSHG 223


>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; member of the cation diffusion
           facilitator (CDF) family, or cation efflux (CE) family,
           PMID:11500563
          Length = 398

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -3

Query: 436 VSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHG 275
           + HDHG   GH        GH  G  HDH  ++  +       ++D    + HG
Sbjct: 180 LGHDHGHSHGH--------GH--GHGHDHHNHSHGVTVTTHHHHHDHEHGHSHG 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,347,931
Number of Sequences: 28952
Number of extensions: 129978
Number of successful extensions: 455
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)