Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0700
         (728 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    39   0.11 
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    37   0.58 
UniRef50_A1FL36 Cluster: Putative uncharacterized protein; n=1; ...    36   0.77 
UniRef50_UPI0000DC00C7 Cluster: UPI0000DC00C7 related cluster; n...    33   9.5  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 39.1 bits (87), Expect = 0.11
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = -3

Query: 126  GRQRQGSAPGIAEVHGRR 73
            GRQR GSAPGIAEVHGRR
Sbjct: 969  GRQRLGSAPGIAEVHGRR 986


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep:
          Like moricin - Manduca sexta (Tobacco hawkmoth)
          (Tobacco hornworm)
          Length = 248

 Score = 36.7 bits (81), Expect = 0.58
 Identities = 16/20 (80%), Positives = 16/20 (80%)
 Frame = -1

Query: 83 MGDGNQSPSGGPCARLPTRA 24
          MGDGN SPSG P A LPTRA
Sbjct: 1  MGDGNHSPSGRPYASLPTRA 20


>UniRef50_A1FL36 Cluster: Putative uncharacterized protein; n=1;
           Pseudomonas putida W619|Rep: Putative uncharacterized
           protein - Pseudomonas putida W619
          Length = 719

 Score = 36.3 bits (80), Expect = 0.77
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 505 WNFNAPTHFEWAQSCWAPIRTRKYPPVSVHTRNRSISLYSNTV 633
           W+  A +H  W  SC   I  R+  P S+H +N S +  S+T+
Sbjct: 650 WSHGAASHIVWEASCAQTIINRRETPQSLHNKNYSATRTSHTI 692


>UniRef50_UPI0000DC00C7 Cluster: UPI0000DC00C7 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC00C7 UniRef100 entry -
           Rattus norvegicus
          Length = 376

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 143 LTSVGSVGSGKALPLALLKSMGDGNQSPSGGPCARLP 33
           L S+G  G+G+   +AL+ S G+G + P  GPC  LP
Sbjct: 43  LPSLGDAGAGRGPLMALVGSRGEGAREP--GPCPVLP 77


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 733,943,970
Number of Sequences: 1657284
Number of extensions: 14819876
Number of successful extensions: 31503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31501
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)