Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0700
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   4.8  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   8.4  

>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 285 YPCGLTRRPTPSNYANYNLCG 223
           YP    R+P+P  Y+NY+  G
Sbjct: 314 YPSSSRRKPSPDRYSNYSSRG 334


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 22  IALVGRRAHGPP-DGDWLPSPMDFSNARGRALPLPTE 129
           ++++ +R+H  P   +W   P+D SN   R L  P E
Sbjct: 195 MSVLDKRSHPRPLRSEWKGPPLDLSNDENRHLLHPAE 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,865
Number of Sequences: 5004
Number of extensions: 60038
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)