Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0700
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_41684| Best HMM Match : Ferric_reduct (HMM E-Value=0.00026)         28   6.7  
SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9)                      28   6.7  

>SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 4  IFYLFFIALVGRRAHGPPDGD 66
          +F L F+  VGR+ HG PDGD
Sbjct: 7  LFSLLFVVHVGRQVHGAPDGD 27


>SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 582 RWIFPCPDWCPTRLGPFEMSRSVK 511
           RWIFPC  W     G  +++R +K
Sbjct: 256 RWIFPCHQWLSLYEGDCKIARQLK 279


>SB_41684| Best HMM Match : Ferric_reduct (HMM E-Value=0.00026)
          Length = 177

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 628 CLNTTKYYDSWCEHSQVDISLS*L--VPNKTGPIRNE 524
           C N     DSW + +++D  LS L    N   PIR+E
Sbjct: 64  CYNFENLIDSWSKENEIDAKLSQLDGADNWVNPIRSE 100


>SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9)
          Length = 105

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 38  DEHTAHLMVIGYRRPWTSAMPGAEPCRCLPSLPKLV 145
           + +T + +  GY   ++S  PG EP +CL ++ K+V
Sbjct: 13  NNNTEYRLQAGYGLRFSSKRPGYEPGQCLKAIMKVV 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,752,538
Number of Sequences: 59808
Number of extensions: 478059
Number of successful extensions: 895
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)