Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0700
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-4|AAF99988.2|  618|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z50740-2|CAA90608.1|  383|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>L15314-4|AAF99988.2|  618|Caenorhabditis elegans Hypothetical
           protein K06H7.3 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 285 YPCGLTRRPTPSNYANYNLC 226
           + CG+   PTP  Y++YN C
Sbjct: 585 HQCGVQLPPTPFQYSHYNFC 604


>Z50740-2|CAA90608.1|  383|Caenorhabditis elegans Hypothetical
           protein F31B12.3 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 337 CPIFQIKTLLHGRNRR 290
           C +FQ+K LLHGR  R
Sbjct: 332 CKVFQVKELLHGRTLR 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,759,227
Number of Sequences: 27780
Number of extensions: 353558
Number of successful extensions: 723
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)