Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0700
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.9  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          23   3.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 254 GVGRLVSPHGYVPPIS 301
           G+   VSP+GYV PIS
Sbjct: 317 GILTPVSPYGYVKPIS 332


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 28  LVGRRAHGPPDGDWLP 75
           L+G R   PP  DW P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 52  PPDGDWLPSPMDFSNARG 105
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 307 EVAF*FERWGSCCIVKTRSLE 369
           ++ F   +W   CIV  R LE
Sbjct: 45  DITFGVNKWSKVCIVVRRKLE 65


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +1

Query: 559 IRTRKYPPVSVHTRNRSISLYSNTVLW 639
           + TRK P     +++   ++Y+  V+W
Sbjct: 835 VLTRKIPEAFNESKHIGFTMYTTCVIW 861


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,357
Number of Sequences: 438
Number of extensions: 4770
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)