Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0700
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04100.1 68415.m00393 MATE efflux family protein similar to r...    29   4.2  
At1g64460.1 68414.m07308 phosphatidylinositol 3- and 4-kinase fa...    29   4.2  
At3g51020.1 68416.m05586 hypothetical protein                          28   5.5  
At5g26570.1 68418.m03152 glycoside hydrolase starch-binding doma...    27   9.6  
At4g18380.1 68417.m02728 F-box family protein contains F-box dom...    27   9.6  

>At2g04100.1 68415.m00393 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 483

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -1

Query: 254 PVITQIIIFAGFFTFFLKTNI---LKSI*RDLLKFNLMNKLTSVGSVGSGKALPLALLKS 84
           P + ++ +FAG F +FL+  I   L  I RD+  +   N    V  V   +  PL  +  
Sbjct: 327 PEVARLAVFAGIFLWFLEATICSTLLFICRDIFGYAFSNSKEVVDYV--TELSPLLCISF 384

Query: 83  MGDGNQSPSGG 51
           + DG  +  GG
Sbjct: 385 LVDGFSAVLGG 395


>At1g64460.1 68414.m07308 phosphatidylinositol 3- and 4-kinase
           family protein contains Pfam profile PF00454:
           Phosphatidylinositol 3- and 4-kinase
          Length = 301

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 692 CRETVMVDSSIKDGQRHYHNTVFEYNEILRFL 597
           CRETV  DS+I++  R  HN+V   +    FL
Sbjct: 254 CRETVNKDSAIEEIVREAHNSVLPASSEATFL 285


>At3g51020.1 68416.m05586 hypothetical protein 
          Length = 133

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 333 PSFKSKRYFTAEIGGTYPCGLTRRPTPSNY 244
           PSF S+  +  + GG YP G T +P    Y
Sbjct: 92  PSFYSQSSYPGQWGGYYPVGSTMQPYHQQY 121


>At5g26570.1 68418.m03152 glycoside hydrolase starch-binding
           domain-containing protein similar to SEX1 (starch
           excess) [Arabidopsis thaliana] GI:12044358; contains
           Pfam profile PF00686: Starch binding domain
          Length = 1191

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 356 VFTIQQLPHLSNQNATSRQK*AVHTRADSQD 264
           V  +Q+LPHLS+    +RQ+  V    D  D
Sbjct: 743 VMLLQELPHLSHLGVRARQEKIVFVTCDDDD 773


>At4g18380.1 68417.m02728 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 380

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 146 KLTSVGSVGSGKALPLALLKSMGDGNQSPSGGPCARLPTRAIKN 15
           K +   S+ SG + P +LL S GD  +   GG     PT+ +KN
Sbjct: 115 KRSGSSSLPSGSS-PSSLLISGGDDGEIEQGGVTHHSPTQVLKN 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,682,043
Number of Sequences: 28952
Number of extensions: 322716
Number of successful extensions: 624
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)