Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0699
(478 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 83 1e-16
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 81 3e-16
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 81 3e-16
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 81 5e-16
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 81 5e-16
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 80 7e-16
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co... 38 0.004
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 28 2.8
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 28 3.8
At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor... 27 5.0
At5g61070.1 68418.m07663 histone deacetylase family protein (HDA... 27 8.7
At1g29120.2 68414.m03565 expressed protein 27 8.7
At1g29120.1 68414.m03564 expressed protein 27 8.7
>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
Length = 111
Score = 82.6 bits (195), Expect = 1e-16
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = +3
Query: 54 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 233
+S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK E N+ DLI
Sbjct: 1 MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60
Query: 234 NIGS-GVGLLRPL 269
N+G+ G G+ RP+
Sbjct: 61 NVGAGGCGVARPV 73
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 81.4 bits (192), Expect = 3e-16
Identities = 36/68 (52%), Positives = 50/68 (73%)
Frame = +3
Query: 51 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 230
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 231 TNIGSGVG 254
N+G+G G
Sbjct: 61 MNVGAGGG 68
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 81.4 bits (192), Expect = 3e-16
Identities = 36/68 (52%), Positives = 50/68 (73%)
Frame = +3
Query: 51 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 230
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 231 TNIGSGVG 254
N+G+G G
Sbjct: 61 MNVGAGGG 68
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 80.6 bits (190), Expect = 5e-16
Identities = 36/68 (52%), Positives = 49/68 (72%)
Frame = +3
Query: 51 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 230
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 231 TNIGSGVG 254
N+G+G G
Sbjct: 61 MNVGAGGG 68
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 80.6 bits (190), Expect = 5e-16
Identities = 36/68 (52%), Positives = 49/68 (72%)
Frame = +3
Query: 51 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 230
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 231 TNIGSGVG 254
N+G+G G
Sbjct: 61 MNVGAGGG 68
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 80.2 bits (189), Expect = 7e-16
Identities = 36/68 (52%), Positives = 49/68 (72%)
Frame = +3
Query: 51 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 230
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60
Query: 231 TNIGSGVG 254
N+G+G G
Sbjct: 61 MNVGAGGG 68
>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
contains weak similarity to Swiss-Prot:52855 60S acidic
ribosomal protein P1 (L12) [Zea mays]
Length = 46
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +3
Query: 54 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 188
++ ELAC Y+AL+L D VT +ST++K A +++E YWP L
Sbjct: 1 MATGELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/84 (19%), Positives = 36/84 (42%)
Frame = +3
Query: 18 GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAK 197
G +++ K +++ ++ ++ V + V G+ + T A ++ P W +
Sbjct: 203 GPQKVKYGKDNIITAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPEWIAIVGS 262
Query: 198 ALEGINVRDLITNIGSGVGLLRPL 269
G+ D+ T +GS V + L
Sbjct: 263 GYIGLEFSDVYTALGSEVTFIEAL 286
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 202 KALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 95
+ +N P + S TAA KM +I SP+T +S R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317
>At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative similar to SP|P161127 from Arabidopsis
thaliana, SP|P93162 from Glycine max, SP|O22436 from
Nicotiana tabacum; non-consensus AA donor splice site at
exon 1, TG acceptor splice site at exon 2
Length = 418
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 48 KMVSKAELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 212
K+ EL+ + + + +VD + T +++ I KA V+ + PGL AKA GI
Sbjct: 158 KVQKGEELSVIETKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 215
>At5g61070.1 68418.m07663 histone deacetylase family protein (HDA18)
identical to HDA18 [Arabidopsis thaliana] GI:21105769;
similar to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo
sapiens}; contains Pfam profile PF00850: Histone
deacetylase family
Length = 682
Score = 26.6 bits (56), Expect = 8.7
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +3
Query: 45 LKMVSKAELACVYSALILVDDDVAVTGEKI---ST--ILKAAAVDVEPYWPGLFAKALEG 209
L+ + K+ LACV ++L D + + E ST +++A + YWP L A
Sbjct: 366 LESLGKSSLACVQ--VLLEDKQIHGSSETYPLESTRRVIQAVRERLCTYWPSLDASMASN 423
Query: 210 INVRDLITNIGSGVGLLRPLVE 275
N+++ S LLR + E
Sbjct: 424 ENLKNPSAERNSADALLREVEE 445
>At1g29120.2 68414.m03565 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 30 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 173
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
>At1g29120.1 68414.m03564 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 30 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 173
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,988,312
Number of Sequences: 28952
Number of extensions: 133498
Number of successful extensions: 377
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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