Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0698
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    29   0.29 
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    28   0.68 
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    27   2.1  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    26   2.7  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    25   4.8  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   4.8  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    25   8.4  

>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 129 WLPVVDRGYFVGTDFHLPYIVQVQDWKLH*DSKAF 233
           W P  D    +  D HLPY + V DW    D+ A+
Sbjct: 373 WGPTCDSLDVIANDAHLPYELNVGDWIYFEDAGAY 407


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -3

Query: 343 IREGLSFSRNTFASSLNESQVLRSPAD 263
           +R+GLS  +N+F S  N SQ+ +SP+D
Sbjct: 36  VRKGLSKFKNSFLSRKNSSQI-KSPSD 61


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 233 ESFRVSMKFPVLYLYNVRQMEIGTNKIPTINNR 135
           E+  V  +   LYL N++   IG N IP  NN+
Sbjct: 110 EAPEVYFENDTLYLANLKNQNIGDNVIPYPNNK 142


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 331 LSFSRNTFASSLNESQVLRSPAD 263
           L  S+ T +SSLN+S +LR PA+
Sbjct: 316 LGASQTTDSSSLNQSSLLRRPAN 338


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 198 VLVQCKADGNRYQQNTHDQQQVTSHISGHS 109
           + V C  D   Y+QN+H + +  + + GH+
Sbjct: 186 IAVGCMNDAYIYKQNSHGKWKKVAELPGHT 215


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 81  QCVQEYNNHHGWRDQTPT 28
           +C    NN HGW  +TPT
Sbjct: 529 RCRMVKNNEHGWVVETPT 546


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 242 ERKESFRVSMKFPVLYLYNVRQMEIGTNKI 153
           ++ E+F VSM   V +LYN+R  ++  N +
Sbjct: 188 QKIEAFVVSMLDEVAWLYNLRGADVPYNPV 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,984
Number of Sequences: 5004
Number of extensions: 43421
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)