Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0698
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345...    27   6.3  
02_04_0624 + 24538095-24538183,24538429-24538612,24538725-245388...    27   6.3  
02_05_0984 + 33320080-33320140,33320219-33320404,33320771-333210...    27   8.4  
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619...    27   8.4  

>07_03_1692 -
           28733184-28733980,28734306-28734373,28734481-28734594,
           28734835-28734884,28735012-28735422,28735534-28735610,
           28736083-28736257,28736843-28736939,28737070-28737833,
           28737900-28738001,28738093-28738174,28739004-28739161
          Length = 964

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 180 PYIVQVQDWKLH*-DSKAFFPLQGILGPRSAGERRTWLSFKEDAKVLREKLN 332
           P +V ++D+++   D    F  + I   RS GE+  W+   + +K  R  LN
Sbjct: 608 PTVVMIEDYEIEEYDEPPVFAKRSIFTIRSTGEQDQWIQCDDCSKWRRLPLN 659


>02_04_0624 +
           24538095-24538183,24538429-24538612,24538725-24538886,
           24538988-24539225,24539301-24539370,24539439-24539530,
           24539799-24539836,24540018-24540039,24540462-24540618,
           24540702-24540753,24542144-24542207,24542279-24542362,
           24543418-24543543,24543622-24543818,24543903-24544091,
           24544186-24544434,24544507-24544556,24544977-24545059,
           24545164-24545449,24545751-24545794,24545878-24546626
          Length = 1074

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 8/35 (22%), Positives = 20/35 (57%)
 Frame = +3

Query: 282 TWLSFKEDAKVLREKLNPSRITHVWYSLIGSYRRR 386
           TW+  + + K L  ++N  +   +W+ ++G+  +R
Sbjct: 459 TWIQLRRNEKKLLNEINADKEGRLWFHVVGANGKR 493


>02_05_0984 +
           33320080-33320140,33320219-33320404,33320771-33321028,
           33321147-33321625
          Length = 327

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 98  CSSEEWPDMWLVTCC*SWVFCWYRFPSALH 187
           C S + P  W+ +CC S + C Y  P   H
Sbjct: 189 CCSCDRPADWITSCC-SLMLCSYCMPDKFH 217


>02_02_0543 +
           11360514-11361350,11361434-11361559,11361648-11361976,
           11362078-11362861
          Length = 691

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -1

Query: 126 HISGHSSEEQCFV*NQCVQEYNNHHGWRDQTPTHAP 19
           H++  S ++   +  +    Y +HH W  +TP  +P
Sbjct: 234 HVAEPSVDDTVAILRRLKPSYQDHHAWISRTPPSSP 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,201,608
Number of Sequences: 37544
Number of extensions: 261629
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)