Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0698
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54439| Best HMM Match : SNF (HMM E-Value=0)                         38   0.005
SB_32169| Best HMM Match : SNF (HMM E-Value=7.9e-16)                   34   0.057
SB_19951| Best HMM Match : SNF (HMM E-Value=0)                         34   0.075
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)                31   0.53 
SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)                    30   0.92 
SB_35665| Best HMM Match : PAN (HMM E-Value=0.017)                     30   1.2  
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_24119| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_54439| Best HMM Match : SNF (HMM E-Value=0)
          Length = 701

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 4   KTSPYWRMCWGLITPAMMIIVFLYALISYEALLF 105
           + +PY ++CW   TP   + VF+++L++YE L +
Sbjct: 341 RINPYLKVCWIFCTPIFCLAVFIFSLVNYEPLTY 374


>SB_32169| Best HMM Match : SNF (HMM E-Value=7.9e-16)
          Length = 258

 Score = 34.3 bits (75), Expect = 0.057
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +1

Query: 16  YWRMCWGLITPAMMIIVFLYALISYEALLFGGMAGYVA-----XXXXXXXXXXXXPISIC 180
           +W +CW  I+P M++ +F+++L  Y+ + +  +  Y A                 P+++C
Sbjct: 150 WWVICWKYISPIMVLGIFVFSLAKYKRITYENVP-YPAWAEGVGWLLALSSMLCIPVTMC 208

Query: 181 LTLYKYRTGNFIETL 225
             +YK   G F++ L
Sbjct: 209 YKIYK-AEGTFLQRL 222


>SB_19951| Best HMM Match : SNF (HMM E-Value=0)
          Length = 359

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +1

Query: 4   KTSPYWRMCWGLITPAMMIIVFLYALISYEALLF 105
           K  P+W + W  ITPA++  +F+++L+ ++ + +
Sbjct: 281 KVWPWWPIAWKYITPAVITGIFIFSLVQWQGVSY 314


>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
          Length = 351

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -1

Query: 243 GAERKL*SLNEVSSPVLVQCKADGNRYQQNTHDQQQVTSHISGHSSEEQCFV*NQC 76
           G  +K    NE+S    V C   G +Y+Q+ H ++   SH  GHS + +    + C
Sbjct: 211 GVTKKQIQSNEISHKKYV-CSTCGKQYKQSGHMRRHERSHEHGHSDKGKSDTRHHC 265


>SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)
          Length = 721

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 166 PISICLTLYKYRTGNFIETLKLSFRSKESWVQDQLANAEPGFHLKKTR-KYYEKNLIPHE 342
           P  IC+ ++ +R       ++   + ++S+ QD+     P FH+K  R + Y    IP E
Sbjct: 229 PQKICVVVFIWRLLETKYKIRRRGKGEDSYKQDKKVRQIPEFHIKNARTETYNPRKIPRE 288


>SB_35665| Best HMM Match : PAN (HMM E-Value=0.017)
          Length = 218

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 235 FRSKESWVQDQLANAEPGFHLKKTRKYYEKNL 330
           F++K+ W+  QL +A+    LKK R  YE+ +
Sbjct: 105 FQTKKGWIYSQLRSAQGKRTLKKKRSGYERKI 136


>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 87  IRSIALRRNGRICGWLPVVDRGYFVGTD 170
           +RS+A  R GR CG L V++  Y+VG D
Sbjct: 98  LRSVAEERAGRYCGGLRVLN-SYWVGQD 124


>SB_24119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -1

Query: 156 NTHDQQQVTSHISGHSSEEQCFV*NQCVQEYNNHH 52
           N  ++ ++  +I+GH  + + F+  +CVQ++   H
Sbjct: 37  NDEERMRLVKNIAGHVKDAKDFIQKRCVQQFTKVH 71


>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 328 SFSRNTFASSLNESQVLRSPADLGPKIPWSGKKALESQ*SFQSCTCTM*GR 176
           SF R  FAS  + S+ + SP D   ++  S         + QSC  ++ GR
Sbjct: 104 SFKRRQFASQQDSSEGMSSPGDYIKELQRSDVSLESLLKTLQSCRVSLTGR 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,659,698
Number of Sequences: 59808
Number of extensions: 320824
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)