Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0698
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    32   0.004
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    32   0.004
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.1  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   4.1  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   4.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   7.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 31.9 bits (69), Expect = 0.004
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 16  YWRMCWGLITPAMMIIVFLYALISY 90
           +W++CW + TPA+ + VF + +I +
Sbjct: 490 WWKICWTITTPAICVGVFTFNIIKF 514


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 31.9 bits (69), Expect = 0.004
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 16  YWRMCWGLITPAMMIIVFLYALISY 90
           +W++CW + TPA+ + VF + +I +
Sbjct: 543 WWKICWTITTPAICVGVFTFNIIKF 567


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 200 LYLYNVRQMEIGTNKIPTI 144
           L LYN+  +E+  NK+ T+
Sbjct: 380 LPLYNLHTLELSDNKLRTV 398


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 68  SCTH*FHTKHCSSEEWPDMWLV 133
           +C   ++   C  E  PD+W V
Sbjct: 122 NCNKIYNLAKCVQESAPDVWFV 143


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 68  SCTH*FHTKHCSSEEWPDMWLV 133
           +C   ++   C  E  PD+W V
Sbjct: 122 NCNKIYNLAKCVQESAPDVWFV 143


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 498 LRYLYSIIGTISFSINIH 445
           LR  +SI GT+   INIH
Sbjct: 163 LRTRWSISGTVFDLINIH 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,135
Number of Sequences: 438
Number of extensions: 3256
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)