Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0698
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ...    29   1.3  
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ...    29   1.3  
At2g22950.1 68415.m02725 calcium-transporting ATPase, plasma mem...    27   7.0  
At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger) fa...    27   7.0  
At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger) fa...    27   7.0  
At1g35540.1 68414.m04413 transcriptional factor B3 family protei...    27   7.0  
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    27   9.3  

>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 383

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = -2

Query: 170 IGTNKIPTINNR*PATYPAIPPKSNASYEISAYRNTIIIMAGVIRPQH 27
           + TN  PTI     ++YP +P  S +S +++  R+ +I ++ +++P H
Sbjct: 224 VTTNSSPTIPPS--SSYPQMPNASPSSAQLAPTRSKVIDVSHLLKPPH 269


>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 661

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = -2

Query: 170 IGTNKIPTINNR*PATYPAIPPKSNASYEISAYRNTIIIMAGVIRPQH 27
           + TN  PTI     ++YP +P  S +S +++  R+ +I ++ +++P H
Sbjct: 224 VTTNSSPTIPPS--SSYPQMPNASPSSAQLAPTRSKVIDVSHLLKPPH 269


>At2g22950.1 68415.m02725 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca2+-ATPase, putative (ACA7)
           identical to SP|O64806 Potential calcium-transporting
           ATPase 7, plasma  membrane-type (EC 3.6.3.8)
           (Ca(2+)-ATPase isoform 7) {Arabidopsis thaliana}; strong
           similarity to SP|O81108 Calcium-transporting ATPase 2,
           plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform
           2) {Arabidopsis thaliana}
          Length = 1015

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 19/44 (43%), Positives = 24/44 (54%)
 Frame = -3

Query: 352 TCVIREGLSFSRNTFASSLNESQVLRSPADLGPKIPWSGKKALE 221
           T + + GLSF+  TFA  L +   +R    LGP   WSG  ALE
Sbjct: 354 TIIGKIGLSFAIVTFAV-LVQGMFMRK-LSLGPHWWWSGDDALE 395


>At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 162

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 71  CTH*FHTKHCSSEEWPDMWLVTC 139
           C H FH K C  E+W D W +TC
Sbjct: 121 CGHLFH-KTCL-EKWIDYWNITC 141


>At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 162

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 71  CTH*FHTKHCSSEEWPDMWLVTC 139
           C H FH K C  E+W D W +TC
Sbjct: 121 CGHLFH-KTCL-EKWIDYWNITC 141


>At1g35540.1 68414.m04413 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profiles: PF02362 B3 DNA binding domain, PF02309:
           AUX/IAA family
          Length = 605

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 334 GLSFSRNTFASSLNESQVLRSPADLGPK 251
           GL  SR T      +SQ+LRSP ++  K
Sbjct: 477 GLEISRLTQEKKFGQSQILRSPTEIQSK 504


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -2

Query: 257 TQDSLERKESFR-VSMKFPVLYLYNVRQMEIGTNKIPTINNR*P---ATYPAIPPKSNAS 90
           T++ L   E  R V+   P+L     +     ++++   NNR      TY + P  S +S
Sbjct: 207 TEEELSNSEDLRKVTGASPLLLKLKQKNWSRSSSRLLRANNRKEDSSCTYNSTPALSTSS 266

Query: 89  YEISAYRN 66
           Y + A RN
Sbjct: 267 YNMYAVRN 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,870,856
Number of Sequences: 28952
Number of extensions: 218228
Number of successful extensions: 543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)