Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0697
         (988 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    27   4.1  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   5.4  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    26   7.1  

>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 594 VSAETVPHEVVLRDLGAAGPVQPFDEXSQALGR 496
           + AET+  E +L+DLGA   +      SQA+GR
Sbjct: 607 IRAETIAAEDILQDLGA---ISMISSDSQAMGR 636


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 548 EPLVRFSHSMXXAKLWADLKTXSRGHYVVAGCPDAPVCDDDIXILGLEESRN*QSIEV 375
           EP+++    +     WADLK      Y+V G  + P  D +I  L L    N +  E+
Sbjct: 72  EPIMKALGKLLEPMSWADLKKFGIESYLVTGL-EHPSTDVEIFCLHLIRRANWEKKEI 128


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 556 SQYHLVGHSLGGHQXGIIGXXLGGKVPYITSXDP 657
           +Q  L GHSLGG    ++G   G  +P +T   P
Sbjct: 275 AQIWLTGHSLGGATAALMGLSFG--IPTVTFEAP 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,967
Number of Sequences: 5004
Number of extensions: 58227
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)