Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0697
         (988 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   6.1  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    24   8.1  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 153 PSGTLGRAGSEGSPALTGPHC 91
           P G +G  G +G   L GP C
Sbjct: 264 PPGMIGLKGDKGLAGLPGPSC 284



 Score = 24.2 bits (50), Expect = 6.1
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 177 ATDLRGGRPS-GTLGRAGSEGSPALTGP 97
           A  L+G R   G  GR G +G+P L GP
Sbjct: 759 ARGLQGLRGDVGPEGRPGRDGAPGLPGP 786


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.8 bits (49), Expect = 8.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 153 PSGTLGRAGSEGSPALTGP 97
           P G  GR G  G P + GP
Sbjct: 381 PKGEPGRDGIPGQPGIAGP 399


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 880,742
Number of Sequences: 2352
Number of extensions: 15567
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 108119037
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)