Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0697
         (988 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protei...    31   1.7  
L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protei...    31   1.7  
AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell...    31   1.7  
Z81097-15|CAB03172.1|  412|Caenorhabditis elegans Hypothetical p...    29   6.7  
Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +1

Query: 403 SSRPRIXMSSSQTGASGQPATT*WPLLXVFK----SAQSLAXFIEWLNRTSGSKVSQYHL 570
           SS      S+S  GASG P+++       +     SA   A F  + + TS S+++ Y  
Sbjct: 25  SSSSSSSSSTSSVGASGIPSSSELSSTIGYDPMTASAALSAHFGSYYDPTSSSQIASYFA 84

Query: 571 VGHSLGGHQXGIIGXXLGGKVPYITS 648
               LGG Q  I+G       P +TS
Sbjct: 85  SSQGLGGPQYPILGDQSLCYNPSVTS 110


>L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +1

Query: 403 SSRPRIXMSSSQTGASGQPATT*WPLLXVFK----SAQSLAXFIEWLNRTSGSKVSQYHL 570
           SS      S+S  GASG P+++       +     SA   A F  + + TS S+++ Y  
Sbjct: 25  SSSSSSSSSTSSVGASGIPSSSELSSTIGYDPMTASAALSAHFGSYYDPTSSSQIASYFA 84

Query: 571 VGHSLGGHQXGIIGXXLGGKVPYITS 648
               LGG Q  I+G       P +TS
Sbjct: 85  SSQGLGGPQYPILGDQSLCYNPSVTS 110


>AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell
           lineage protein 39 protein.
          Length = 253

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +1

Query: 403 SSRPRIXMSSSQTGASGQPATT*WPLLXVFK----SAQSLAXFIEWLNRTSGSKVSQYHL 570
           SS      S+S  GASG P+++       +     SA   A F  + + TS S+++ Y  
Sbjct: 25  SSSSSSSSSTSSVGASGIPSSSELSSTIGYDPMTASAALSAHFGSYYDPTSSSQIASYFA 84

Query: 571 VGHSLGGHQXGIIGXXLGGKVPYITS 648
               LGG Q  I+G       P +TS
Sbjct: 85  SSQGLGGPQYPILGDQSLCYNPSVTS 110


>Z81097-15|CAB03172.1|  412|Caenorhabditis elegans Hypothetical
           protein K07A1.11 protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 639 VWNFSTQXXPDDAXLVSAETVPHEVVLRDLGAAGPVQPF 523
           VW+ S    P  +   S+++VP EV+    G  G V  F
Sbjct: 335 VWDISKIQDPSSSSAASSDSVPPEVIFIHAGHTGKVADF 373


>Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical
           protein F32B4.6 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 499 AQSLAXFIEWLNRTSGSKVSQYHLVGHSLGG 591
           A  L  FI+W+ + +G    + +L GHS+GG
Sbjct: 89  ADDLVGFIDWVRKITGE--DKVNLHGHSMGG 117


>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
            C14C10.5 protein.
          Length = 1908

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 638  YGTFPPRXXPMMPXWC 591
            Y  +PP   PM+P WC
Sbjct: 1676 YDAYPPTFIPMLPLWC 1691


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,391,776
Number of Sequences: 27780
Number of extensions: 369566
Number of successful extensions: 1396
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2573710548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)