Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0697
         (988 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi...    31   1.6  
At3g49160.1 68416.m05373 pyruvate kinase family protein similar ...    30   2.1  

>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 786

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 84  AYDNEVLLKLESPRYQHVPGSRTVSHLED 170
           A D++ L K E  +   VPGS T+S LED
Sbjct: 281 AVDHDYLTKTELDKVLEVPGSETISKLED 309


>At3g49160.1 68416.m05373 pyruvate kinase family protein similar to
           SP|Q92122 Pyruvate kinase, muscle isozyme (EC 2.7.1.40)
           (Cytosolic thyroid hormone binding protein) (CTHBP)
           {Xenopus laevis}; contains Pfam profile PF00224:
           Pyruvate kinase, barrel domain
          Length = 710

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 135 RAGSEGSPALTGPHCHRLVC*SSLVPNSCSPG 40
           R GS   P++T P  HRL C S  + +S  PG
Sbjct: 449 REGSLDEPSVTVPGAHRLTCPSGYLFDSVKPG 480


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,851,917
Number of Sequences: 28952
Number of extensions: 353685
Number of successful extensions: 755
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2402185656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)