Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0695
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.1  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   5.8  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   7.7  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   7.7  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 158 TTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNTSSAST*PVEATTLLVLGPGLPAS 325
           T+ N  ++ + N  +  N  A  N N     N ++A+T    ATT     P  PA+
Sbjct: 55  TSVNTAVYNNNNNTSAANTNAAYNANTAANANANTATTTNAAATTSAAYNPNAPAN 110


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 523 EASTDRYHIVRISSRLPERPPCRLRQSHILQL 618
           EA    + +  I   L E   CR+R  H+LQL
Sbjct: 485 EAGLKEFLLGVIDRHLKEYDSCRVRMEHVLQL 516


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -2

Query: 536 SVDASAAADVRGPPESPLQVLRPLEPSTQRVEAMITLFPNVRAQTALVMTWRLTW 372
           S D+ +++D      S  +  R  EP+++   A IT       +T  V   RL+W
Sbjct: 218 SGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSW 272


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 625 DPGVEGCDSGEAGRVASLATLS*SERCDTDQLTLPPLP 512
           +P   GCD+G  G V S +T S      T   ++ P P
Sbjct: 827 NPSQYGCDNGALGPVQSSSTTSSITPTPTTTSSITPTP 864


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,688
Number of Sequences: 5004
Number of extensions: 40868
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)