Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0695
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    29   2.2  
At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1) domain...    29   2.9  
At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa...    27   8.8  
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase...    27   8.8  

>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = +2

Query: 275 PVEATTLLVLGPGLPASEGPPMLLREPTTNKNAK*ASRSLP-TPSAPARLETM*SLPPP 448
           P    T +V     P    PP     PT   N   A +S P  P AP RL T  + PPP
Sbjct: 714 PPAPPTPIVHTSSPPPPPPPPPPPAPPTPQSNGISAMKSSPPAPPAPPRLPTHSASPPP 772


>At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein predicted proteins,
           Arabidopsis thaliana and Drosophila melanogaster
           contains Pfam profile PF00564: PB1 domain
          Length = 531

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 4/119 (3%)
 Frame = +2

Query: 11  WQNFHLRSSLLTNTRSVTAAHCWRTRRAQARQFTL---ALGTANIFSGGTRVTTSNVQMH 181
           WQ     S++  N  + T+ +    ++ Q + + +   +     ++    R T    Q +
Sbjct: 346 WQGNTNNSNIQGNIYTTTSQNLPEQQQQQQQVYMIPAQSQAPGTLYQSVMRPTVQGNQGY 405

Query: 182 GSYNMDTLHN-DVAIINHNHVGFTNTSSAST*PVEATTLLVLGPGLPASEGPPMLLREP 355
               +  LH+ D  +   N  G+       T       +  +GP +  S GPPM L+EP
Sbjct: 406 YPSPVQRLHHPDAYMEQQNQPGYNVVQPQPTFSGGPQVMTSVGPQVMTSVGPPMGLQEP 464


>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 301

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 309 LGCRLRKDLRCCFGSQQPTKTPSEPP 386
           L C   KDLR CF    P   P  PP
Sbjct: 10  LSCLQFKDLRFCFRQYPPPPPPPPPP 35


>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK9) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 310

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 361 QQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTC 483
           +++RQ++L++    +  R F  +   A+T  V G NG S C
Sbjct: 5   RERRQLNLRLPLPPISDRRFSTSSSSATTTTVAGCNGISAC 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,609,202
Number of Sequences: 28952
Number of extensions: 250544
Number of successful extensions: 906
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)