Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0694
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    29   0.48 
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    27   2.6  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   7.8  

>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 509  VAAFDNSRLIYLN*GNLAYCIIYKIT---IKDTRRKLSKLSLAIQFSTQNKN 363
            V  FDN+R++YLN  ++ Y ++ K+      D  +K SK    +  + Q KN
Sbjct: 1057 VVDFDNNRVVYLNDEDITYDVVEKLNGTLALDRAKKDSKKPNILDRAIQMKN 1108


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 143 NKLKLLHTFHTIATSYIQNLDSRKADYCLVLCAIALFNNDLSTLL 9
           + L +  T +TIA  Y++N    K   CLVL  +   ++ L  LL
Sbjct: 154 DSLDVKKTIYTIAIKYLENSGIDKEASCLVLSRLFSRDDGLDLLL 198


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 271 LCK*IIKNFDYNCLWSSKVLYLLNYLKINNVFLFC 375
           LC   ++ FD++C+W +  +  LN  +   +FL C
Sbjct: 176 LCNICVEKFDHHCIWINNCVG-LNNARYFFLFLLC 209


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 425 DTRRKLSKLSLAIQFSTQNKNTL 357
           D  +K+ +LSLA   S++N+NT+
Sbjct: 305 DQTKKIEELSLAASRSSENENTI 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,352
Number of Sequences: 5004
Number of extensions: 55196
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)