Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0693
(426 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 127 6e-31
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 127 6e-31
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 28 0.70
SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0... 28 0.70
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 27 1.2
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 25 3.7
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 4.9
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 25 4.9
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 25 6.5
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 6.5
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 127 bits (307), Expect = 6e-31
Identities = 59/81 (72%), Positives = 68/81 (83%)
Frame = +1
Query: 13 MVRMNVXRDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 192
MVR +V D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF +DDHR+GK
Sbjct: 1 MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60
Query: 193 IVVNLTGRLNKCGVISPRFDV 255
IV+ L GR+NKCGVISPRF+V
Sbjct: 61 IVIQLNGRINKCGVISPRFNV 81
Score = 70.5 bits (165), Expect = 1e-13
Identities = 33/48 (68%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 INDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 398
+ DIE+W N LLPSRQ G +VLTTS GIM H EAR K GGKILGFF+
Sbjct: 83 LKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 127 bits (307), Expect = 6e-31
Identities = 59/81 (72%), Positives = 68/81 (83%)
Frame = +1
Query: 13 MVRMNVXRDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 192
MVR +V D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF +DDHR+GK
Sbjct: 1 MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60
Query: 193 IVVNLTGRLNKCGVISPRFDV 255
IV+ L GR+NKCGVISPRF+V
Sbjct: 61 IVIQLNGRINKCGVISPRFNV 81
Score = 70.5 bits (165), Expect = 1e-13
Identities = 33/48 (68%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 INDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 398
+ DIE+W N LLPSRQ G +VLTTS GIM H EAR K GGKILGFF+
Sbjct: 83 LKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 27.9 bits (59), Expect = 0.70
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 226 CGVISPRFDVPSTILKDGLIC 288
CGV S + PS +++DG +C
Sbjct: 249 CGVPSANYKFPSNLVRDGAVC 269
>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
Q0130|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 74
Score = 27.9 bits (59), Expect = 0.70
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 269 NIVDGTSKRGEMTPHLFSLPV 207
N++ GTS+ + PHLFS+ +
Sbjct: 30 NLISGTSRNPSVRPHLFSMAI 50
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 205 LTGRLNKCGVISPRFDVPSTILKDGLICS 291
LT +L KCG+I + S I D + C+
Sbjct: 398 LTNQLRKCGIIGATHPLRSVIPLDNIFCN 426
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 292 PHDSLVT*SLQQVVASWTMKKPEENTLEEK 381
P+ S +T SL Q + W +++PE EK
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPESMLDAEK 183
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 4.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 303 FGYLVLTTSGGIMDHEEARRKHLGGKIL 386
FGY+V+TT+ + A K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 25.0 bits (52), Expect = 4.9
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +1
Query: 247 FDVPSTILKDGLICSPHDSLVT*SLQQVVASWTMKKPEENTLEEKF*ASFSKFT 408
FD+ S K L + +SL +L+++ A+ +M ++NT + +F S FT
Sbjct: 587 FDIVSDKFKGLLTPNLFESLFILNLERLKAAKSMDHMKQNTFDMEFINYLSDFT 640
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 24.6 bits (51), Expect = 6.5
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 225 VWCHFTSF*-CPINDIERWTNLLPSRQFGYLVLTTSGGIMDHEEARRK-HLGGKILGFFF 398
V+ + TSF CP+ D L + Q ++ LT GGI D + H ++ G +F
Sbjct: 287 VFLNITSFRNCPMADAPMLQVLEKAAQTVFVPLTVGGGIRDVSDPDGTFHPAVEVAGIYF 346
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 24.6 bits (51), Expect = 6.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 146 PCFIITVKNLTMTLEQGLMRTCLFPRFSALCIDFKASLNTFIRTMAK 6
P +I N +L+ L R F R L + + + +RTMAK
Sbjct: 314 PVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAK 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,624,253
Number of Sequences: 5004
Number of extensions: 30254
Number of successful extensions: 68
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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