Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0693
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 142 1e-34
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 141 2e-34
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 79 1e-15
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 42 2e-04
03_06_0497 - 34332310-34334415 29 1.2
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 29 2.1
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 27 8.3
07_01_0802 - 6287180-6287605 27 8.3
01_06_0338 + 28538951-28538966,28539073-28539183,28539311-285394... 27 8.3
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 142 bits (344), Expect = 1e-34
Identities = 66/81 (81%), Positives = 73/81 (90%)
Frame = +1
Query: 13 MVRMNVXRDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 192
MVR++V DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 193 IVVNLTGRLNKCGVISPRFDV 255
IVV L GRLNKCGVISPRFDV
Sbjct: 61 IVVELNGRLNKCGVISPRFDV 81
Score = 82.6 bits (195), Expect = 1e-16
Identities = 36/48 (75%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 INDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 398
+ +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 83 VKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 141 bits (342), Expect = 2e-34
Identities = 65/81 (80%), Positives = 73/81 (90%)
Frame = +1
Query: 13 MVRMNVXRDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 192
MVR++V DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 193 IVVNLTGRLNKCGVISPRFDV 255
IVV L GRLNKCGVISPRFDV
Sbjct: 61 IVVELNGRLNKCGVISPRFDV 81
Score = 71.7 bits (168), Expect = 2e-13
Identities = 33/44 (75%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Frame = +3
Query: 258 INDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 386
+ +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L
Sbjct: 83 VKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 79.4 bits (187), Expect = 1e-15
Identities = 35/76 (46%), Positives = 51/76 (67%)
Frame = +1
Query: 28 VXRDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 207
+ DAL+++ NAE+RGK L++P S V+V FL +M GYI +FE++D HR GKI V L
Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64
Query: 208 TGRLNKCGVISPRFDV 255
GR+ C ++ R D+
Sbjct: 65 HGRIKDCKALTYRQDI 80
Score = 57.6 bits (133), Expect = 4e-09
Identities = 22/45 (48%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Frame = +3
Query: 264 DIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFF 395
+IE++ +LP+RQ+GY+V+TT G++DHEEA ++++GG++LG+F
Sbjct: 84 EIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQVLGYF 128
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +1
Query: 169 VDDHRAGKIVVNLTGRLNKCGVISPRFDVPSTILKDG 279
VDDH++G+I++ GRLNK GVIS R DV L G
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKLSPG 948
>03_06_0497 - 34332310-34334415
Length = 701
Score = 29.5 bits (63), Expect = 1.2
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 154 GEFEIVDDH-RAGKIVVNLTGRLNKCGVISPRFDVPSTILKDGLICSPHDSLVT*SLQQV 330
G E+V +H +AG+I R+ C D +LK GL+CS D S++QV
Sbjct: 575 GLVELVLEHWKAGEITAARDPRIGDCDE-----DDLEVVLKLGLLCSHPDPRRRPSMRQV 629
Query: 331 VASWTMKKPEENTLEEKF*ASFSKF 405
V P TL E +F
Sbjct: 630 VQILEGAAPAPETLPEDLECGVGQF 654
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 28.7 bits (61), Expect = 2.1
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 383 NFSSKVFSSGFFMVHDATTCCKD*VTKLS*GEQISPSFNIVDGTSKRG-EMTPHLFSLP 210
N SKV+S+G+ + +C K+ + +S Q+ F+I+ G E +LFS P
Sbjct: 335 NSRSKVWSAGYLSLALWDSCTKELLKVISVDGQVDTRFDILSSQDPFGYETKQNLFSAP 393
>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 295 EGSRLVHLSISLMGHQNEV 239
E RL HLS+ L GH NEV
Sbjct: 1379 ECMRLEHLSLFLRGHNNEV 1397
>07_01_0802 - 6287180-6287605
Length = 141
Score = 26.6 bits (56), Expect = 8.3
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +3
Query: 180 QSWQDCCKSHRQTKQVWC 233
Q WQDCC+ WC
Sbjct: 51 QVWQDCCRQLAAVDDGWC 68
>01_06_0338 +
28538951-28538966,28539073-28539183,28539311-28539479,
28540841-28541063,28541148-28541204,28541718-28541861,
28541939-28542019,28543026-28543113,28543579-28543943,
28544011-28544086,28544174-28544367,28544846-28545009,
28545080-28545152,28545237-28545350,28545839-28545919,
28546043-28546102,28546180-28546289,28546325-28546501,
28546599-28546683
Length = 795
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +1
Query: 199 VNLTGRLNKCGVISPRFDVPSTILKDGLIC----SPHDSL 306
V L + N+ V SP +V T+LKD +IC SP DS+
Sbjct: 156 VKLVLKKNRYFVESPFPEVLKTLLKDDIICRARISPEDSV 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,495,756
Number of Sequences: 37544
Number of extensions: 199463
Number of successful extensions: 415
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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