Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0693
         (426 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             75   2e-14
SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 74.9 bits (176), Expect = 2e-14
 Identities = 46/79 (58%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
 Frame = +1

Query: 13  MVRMNVXRDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 192
           MVR+NV  DAL SI NAEKRGKRQV IRP SKVIVKFLTVMMKH        V   R G+
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKH--------VAQPRIGE 52

Query: 193 IVVN-LTGRLNKCGVISPR 246
           +V    +G L+  GV+  R
Sbjct: 53  MVTRPCSGALSAAGVVVTR 71


>SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 46  KSIHNAEKRGKRQVLIRPCSKVIVKFL--TVMMKHGYIGEFEIV 171
           K+IHN   RGKR  +++    V   F   TV+M++G    F++V
Sbjct: 17  KNIHNVNVRGKRGNIVQVYPAVEYDFTPNTVLMRNGDYVHFQLV 60


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/17 (70%), Positives = 15/17 (88%), Gaps = 1/17 (5%)
 Frame = +3

Query: 258 INDIERW-TNLLPSRQF 305
           + DIE+W +NLLPSRQF
Sbjct: 12  VRDIEQWASNLLPSRQF 28


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,988,388
Number of Sequences: 59808
Number of extensions: 228775
Number of successful extensions: 1061
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)