Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0693
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   144   2e-35
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    27   4.3  
U23522-3|AAC46817.1|  432|Caenorhabditis elegans Hypothetical pr...    27   4.3  
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose 6-pho...    27   7.4  
U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose 6-pho...    27   7.4  
AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical...    27   7.4  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    27   7.4  
AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative treh...    27   7.4  
AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative treh...    27   7.4  
AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans trehalose-6-p...    27   7.4  
AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans trehalose-6-p...    27   7.4  
AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical ...    26   9.8  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  144 bits (350), Expect = 2e-35
 Identities = 69/81 (85%), Positives = 74/81 (91%)
 Frame = +1

Query: 13  MVRMNVXRDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 192
           MVRMNV  DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 193 IVVNLTGRLNKCGVISPRFDV 255
           IVVNLTGRLNK  VISPR ++
Sbjct: 61  IVVNLTGRLNKASVISPRLNI 81



 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 41/48 (85%), Positives = 46/48 (95%), Gaps = 1/48 (2%)
 Frame = +3

Query: 258 INDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 398
           +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKHLGGKILGFFF
Sbjct: 83  LNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 180 QSWQDCCKSHRQTKQVWCHFTSF*CPINDIE 272
           +SW   C +  +T +  C F  F C IN I+
Sbjct: 259 KSWDPVCDTRNRTHKNVCQFKFFACKINKID 289


>U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical
           protein F22A3.2 protein.
          Length = 145

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 228 TLV*SACEIYNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 82
           ++V +A E ++   +  +   F+  +V V +     ++DDFG+ PD+DL
Sbjct: 14  SVVLAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = +2

Query: 296 TTVWL-PSPYNKWW 334
           T +WL P PYN WW
Sbjct: 29  TVIWLIPRPYNYWW 42


>U23522-3|AAC46817.1|  432|Caenorhabditis elegans Hypothetical
           protein W06B4.1 protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 228 WCHFTSF*CPINDIERWTNLLPSR 299
           WC  TSF   +ND+ER T  + SR
Sbjct: 224 WCGRTSFQMFVNDVERGTENMMSR 247


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
            F37A4.4 protein.
          Length = 1163

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 25   NVXRDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 198
            NV  D+++ I+  N  K  KR   I  C+K     L V  + GY    EI+  H A +  
Sbjct: 826  NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885

Query: 199  VN 204
            +N
Sbjct: 886  LN 887


>Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical
           protein F19H8.1 protein.
          Length = 1229

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 229 GVISPRFDVPSTILKDGLICSPHDSLV 309
           GV++P+ D  + + K+ L+C+P   LV
Sbjct: 685 GVVTPKKDGMNLVAKEMLVCNPKAGLV 711


>U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose
           6-phosphate synthaseprotein 1, isoform b protein.
          Length = 1294

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 229 GVISPRFDVPSTILKDGLICSPHDSLV 309
           GV++P  D  + + K+ L+C+P  SLV
Sbjct: 724 GVVTPSKDGMNLVAKEMLVCNPTASLV 750


>U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose
           6-phosphate synthaseprotein 1, isoform a protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 229 GVISPRFDVPSTILKDGLICSPHDSLV 309
           GV++P  D  + + K+ L+C+P  SLV
Sbjct: 761 GVVTPSKDGMNLVAKEMLVCNPTASLV 787


>AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12b protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 371 KVFSSGFFMVHDATTCCK 318
           KVFS+GFFM  D  + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 371 KVFSSGFFMVHDATTCCK 318
           KVFS+GFFM  D  + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157


>AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative
           trehalose 6-phosphatesynthase protein.
          Length = 1229

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 229 GVISPRFDVPSTILKDGLICSPHDSLV 309
           GV++P+ D  + + K+ L+C+P   LV
Sbjct: 685 GVVTPKKDGMNLVAKEMLVCNPKAGLV 711


>AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative
           trehalose 6-phosphatesynthase protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 229 GVISPRFDVPSTILKDGLICSPHDSLV 309
           GV++P  D  + + K+ L+C+P  SLV
Sbjct: 761 GVVTPSKDGMNLVAKEMLVCNPTASLV 787


>AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans
           trehalose-6-phosphate synthase protein.
          Length = 1230

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 229 GVISPRFDVPSTILKDGLICSPHDSLV 309
           GV++P+ D  + + K+ L+C+P   LV
Sbjct: 685 GVVTPKKDGMNLVAKEMLVCNPKAGLV 711


>AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans
           trehalose-6-phosphate synthase protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 229 GVISPRFDVPSTILKDGLICSPHDSLV 309
           GV++P  D  + + K+ L+C+P  SLV
Sbjct: 761 GVVTPSKDGMNLVAKEMLVCNPTASLV 787


>AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical
           protein C46E10.3 protein.
          Length = 392

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 245 RGEMTPHLFSLPVRFTTILPAL*SSTISNSPM 150
           +G+     + LP RF+T+L AL   T+ NS M
Sbjct: 321 KGDCPQDSYDLP-RFSTVLKALYGCTVGNSDM 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,949,026
Number of Sequences: 27780
Number of extensions: 170275
Number of successful extensions: 330
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)