Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0693
         (426 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy...   142   9e-35
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id...   142   9e-35
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id...   142   9e-35
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy...   140   3e-34
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)         132   7e-32
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)          79   2e-15
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri...    78   2e-15
At1g18390.1 68414.m02297 protein kinase family protein contains ...    29   1.3  
At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative / hi...    28   3.0  
At3g25740.1 68416.m03205 metallopeptidase M24 family protein sim...    27   7.0  
At1g31690.1 68414.m03890 copper amine oxidase, putative similar ...    27   7.0  
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t...    26   9.3  

>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  142 bits (344), Expect = 9e-35
 Identities = 66/81 (81%), Positives = 73/81 (90%)
 Frame = +1

Query: 13  MVRMNVXRDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 192
           MVR++V  DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 193 IVVNLTGRLNKCGVISPRFDV 255
           IVV L GRLNKCGVISPRFDV
Sbjct: 61  IVVELNGRLNKCGVISPRFDV 81



 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 36/48 (75%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
 Frame = +3

Query: 258 INDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 398
           + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 83  VKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  142 bits (344), Expect = 9e-35
 Identities = 66/81 (81%), Positives = 73/81 (90%)
 Frame = +1

Query: 13  MVRMNVXRDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 192
           MVR++V  DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 193 IVVNLTGRLNKCGVISPRFDV 255
           IVV L GRLNKCGVISPRFDV
Sbjct: 61  IVVELNGRLNKCGVISPRFDV 81



 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 36/48 (75%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
 Frame = +3

Query: 258 INDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 398
           + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 83  VKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  142 bits (344), Expect = 9e-35
 Identities = 66/81 (81%), Positives = 73/81 (90%)
 Frame = +1

Query: 13  MVRMNVXRDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 192
           MVR++V  DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 193 IVVNLTGRLNKCGVISPRFDV 255
           IVV L GRLNKCGVISPRFDV
Sbjct: 61  IVVELNGRLNKCGVISPRFDV 81



 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 36/48 (75%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
 Frame = +3

Query: 258 INDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 398
           + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 83  VKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  140 bits (340), Expect = 3e-34
 Identities = 65/81 (80%), Positives = 72/81 (88%)
 Frame = +1

Query: 13  MVRMNVXRDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 192
           MVR++V  D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 193 IVVNLTGRLNKCGVISPRFDV 255
           IVV L GRLNKCGVISPRFDV
Sbjct: 61  IVVELNGRLNKCGVISPRFDV 81



 Score = 80.6 bits (190), Expect = 4e-16
 Identities = 35/48 (72%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
 Frame = +3

Query: 258 INDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 398
           + +IE WT  LLPSRQFG++VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 83  VKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 
          Length = 136

 Score =  132 bits (320), Expect = 7e-32
 Identities = 61/81 (75%), Positives = 69/81 (85%)
 Frame = +1

Query: 13  MVRMNVXRDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 192
           MVR +V  D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 193 IVVNLTGRLNKCGVISPRFDV 255
           IVV L GRLN CGVISPR+D+
Sbjct: 67  IVVELNGRLNNCGVISPRYDL 87



 Score = 81.0 bits (191), Expect = 3e-16
 Identities = 35/48 (72%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
 Frame = +3

Query: 258 INDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 398
           + +IE WT  LLPSRQFGY+VLTTS GIMDHEEAR+K++GGK+LGFF+
Sbjct: 89  VKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136


>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 
          Length = 129

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 36/76 (47%), Positives = 51/76 (67%)
 Frame = +1

Query: 28  VXRDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 207
           +  DAL++I NAEKRGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64

Query: 208 TGRLNKCGVISPRFDV 255
            GR+N C  ++ R DV
Sbjct: 65  QGRVNDCKALTYRQDV 80



 Score = 60.1 bits (139), Expect = 6e-10
 Identities = 25/46 (54%), Positives = 39/46 (84%), Gaps = 1/46 (2%)
 Frame = +3

Query: 261 NDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFF 395
           N+I ++T   LP+RQ+GY+V+TT  GI+DHEEA ++++GG++LGFF
Sbjct: 83  NEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFF 128


>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
           ribosomal protein S15a - Brassica napus,PIR2:S20945
          Length = 129

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 35/76 (46%), Positives = 51/76 (67%)
 Frame = +1

Query: 28  VXRDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 207
           +  DAL++I NAE+RGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 208 TGRLNKCGVISPRFDV 255
            GR+N C  ++ R DV
Sbjct: 65  QGRVNDCKALTYRQDV 80



 Score = 61.7 bits (143), Expect = 2e-10
 Identities = 25/46 (54%), Positives = 40/46 (86%), Gaps = 1/46 (2%)
 Frame = +3

Query: 264 DIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 398
           +IE++T   LP+RQ+GY+V+TT  GI+DHEEA ++++GG++LGFF+
Sbjct: 84  EIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 91  IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 198
           +RPC   +   LT +  +G+  E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591


>At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative /
           histidine--tRNA ligase, putative similar to SP|P12081
           Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA
           ligase) (HisRS) {Homo sapiens}; contains Pfam profiles
           PF00587: tRNA synthetase class II core domain (G, H, P,
           S and T), PF03129: Anticodon binding domain
          Length = 479

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 26/73 (35%), Positives = 35/73 (47%)
 Frame = +1

Query: 112 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPSTILKDGLICS 291
           IVK LT ++    IG++E+  +HR  K+   L G L  CGV   +F           ICS
Sbjct: 175 IVKILTELLDELEIGDYEVKLNHR--KL---LDGMLEICGVPPEKFRT---------ICS 220

Query: 292 PHDSLVT*SLQQV 330
             D L   S +QV
Sbjct: 221 SIDKLDKQSFEQV 233


>At3g25740.1 68416.m03205 metallopeptidase M24 family protein
           similar to SP|O33343 Methionine aminopeptidase (EC
           3.4.11.18) (Peptidase M) {Mycobacterium tuberculosis};
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 344

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 226 CGVISPRFDVPSTILK 273
           CG +SPR  VP  ILK
Sbjct: 66  CGTVSPRLSVPDHILK 81


>At1g31690.1 68414.m03890 copper amine oxidase, putative similar to
           copper amine oxidase [Lens culinaris]
           gi|15451834|gb|AAB34918
          Length = 420

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
 Frame = +1

Query: 61  AEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGV-- 234
           AE  G +   +RP   ++ + +T +  + YI E+E        K+ V LTG L    V  
Sbjct: 126 AEVPGLKITEVRPDVSLVARMVTTVGNYDYIIEYEFKPSGSI-KMGVGLTGVLEVKPVEY 184

Query: 235 ----ISPRFDVPSTILKDGLICSPHDSLVT 312
                    D+  TI+ D  +   HD  VT
Sbjct: 185 VHTSEIKEDDIYGTIVADNTVGVNHDHFVT 214


>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
           T15B16.10 similar to A. thaliana CHP-rich proteins
           encoded by T10M13, GenBank accession number AF001308
          Length = 667

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = +3

Query: 183 SWQDCCKSHRQTKQVWCHFTSF--*CPINDIERW 278
           +W   CK HR +   WC    F    P + IE W
Sbjct: 578 TWFYTCKDHRASLHTWCVLGDFMGLIPKSTIELW 611


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,520,905
Number of Sequences: 28952
Number of extensions: 162197
Number of successful extensions: 311
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)