Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0691
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...    28   1.5  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   2.0  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    27   3.4  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   4.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.9  

>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
 Frame = +1

Query: 367 QNLQNQGQIST--PRVPASTVLEAVDAGVHNTIASPTKMAN---------SWHIAAIGDL 513
           QNL   GQ+ T  P+          D G++ ++A   +  N         S ++  IGDL
Sbjct: 55  QNLVTPGQLVTDDPQFMRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDL 114

Query: 514 VLLKEENAPPMHWKV 558
           ++ K     P  WKV
Sbjct: 115 IIGKIAEVQPKRWKV 129


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 364 GQNLQNQGQISTPRVPASTVLEAVDAGVHNTIASPTKMANS 486
           G+NL+N  QIST   PA   L   D       ++P++ +NS
Sbjct: 513 GRNLKNLTQISTSSTPAHDNLSLNDFFEPREASTPSESSNS 553


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 544 WEERFLLLGVPSPQLQRCARSSPF 473
           W ERF++ G+ SP+L       PF
Sbjct: 65  WRERFVINGIHSPRLLSALLKRPF 88


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
 Frame = +2

Query: 476 WRTPGTSLQLGTWYS*KKKTLLPC----TGRWDESLLCSRERTELLGRRTSGLLRARTGV 643
           W  P   +  GTW+  +   L PC      + +E  L S    E    + S   +++T  
Sbjct: 172 WDGPVYRILRGTWFFSRGDKLYPCEENLATQVEEGYLNSCPYREFSNEKDSAAAQSKTWA 231

Query: 644 ALGIYVHYWIQ 676
            LG Y   ++Q
Sbjct: 232 LLGRYTGGFVQ 242


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 448 VLQHPPLPKQSTQEL*A*KSVPGSVG 371
           +LQH P  + S+QEL   +++P  VG
Sbjct: 899 LLQHDPTKRPSSQELLESEAIPPKVG 924


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,455
Number of Sequences: 5004
Number of extensions: 63249
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)