Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0691
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0192 - 26273599-26274543                                         29   2.7  
05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390     29   3.5  
08_01_0888 + 8719416-8719720,8719747-8720482                           28   6.2  
06_01_0250 - 1883174-1883503                                           28   6.2  
05_03_0318 - 12292969-12293222,12293305-12293898,12297102-122974...    28   6.2  
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311...    28   6.2  
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302...    28   8.2  
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374...    28   8.2  
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848...    28   8.2  

>05_06_0192 - 26273599-26274543
          Length = 314

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 565 FVPPSSAWEERFLLLGVPSPQLQRCARSSPFLSGLQLCYVLQHPPLPK 422
           F PP S  EE ++   + + + +R A + P L+      VL HP LP+
Sbjct: 35  FAPPESEDEESWVWSQIKA-EARRDADAEPALASFLYATVLSHPSLPR 81


>05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390
          Length = 397

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 48  EYRC*RIEAFSSGEGIKFNFQPAYSPHFGGLVE 146
           E++  ++E F   EGIK  F   Y P   G+VE
Sbjct: 93  EFKNTQVEEFLDEEGIKHEFSAPYDPPQNGIVE 125


>08_01_0888 + 8719416-8719720,8719747-8720482
          Length = 346

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +1

Query: 4   GRNFVGAAREIGDFLNTGADE*RLFLPEKE*NLTFSRLTPHISVVLLKHALNRQNI 171
           GR F+  A   G  +N G +  R  +  KE    F   T   S+V +K+  N QNI
Sbjct: 210 GRPFLSTA---GANINVGTESIRFHINGKEEMFEFQPRTEQCSMVRIKYGPNPQNI 262


>06_01_0250 - 1883174-1883503
          Length = 109

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -3

Query: 100 NFIPSPEEKASIRQHR-YSKSHLSLLRLR 17
           +++PS +EKA  +QHR  +   ++LLRLR
Sbjct: 20  DWVPSVQEKAHAKQHRKQNLERMNLLRLR 48


>05_03_0318 -
           12292969-12293222,12293305-12293898,12297102-12297415,
           12297712-12297893,12297960-12298187,12298234-12298698,
           12299393-12299443
          Length = 695

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +1

Query: 4   GRNFVGAAREIGDFLNTGADE*RLFLPEKE*NLTFSRLTPHISVVLLKHALNRQNI 171
           GR F+  A   G  ++ G    R  + EKE    F   T   S+V +K+  N QNI
Sbjct: 107 GRLFLSTA---GANIDVGTGSIRFHINEKEEKFEFQPRTEQCSMVRIKYGPNPQNI 159


>04_03_0181 -
           12327281-12328620,12330922-12331015,12331079-12331183,
           12331404-12332592,12333268-12333461
          Length = 973

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 648 SATPVRARSSPDVRRPSNSVLSREQSSDS 562
           +A P  A  SPDV RPS S   R  S+ S
Sbjct: 136 AAAPAAASGSPDVYRPSLSAAGRSTSARS 164


>09_04_0512 +
           18226981-18227143,18227648-18229555,18229649-18230295,
           18230710-18231949,18232085-18232419,18232500-18232577,
           18232872-18232978,18233020-18233062
          Length = 1506

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 651 PSATPVRARSSPDVRRPSNSVLSREQSSDSSHLPVHGRSV 532
           P   P+R  +S DV +PS S    + + DS+   V G +V
Sbjct: 536 PDLLPLRLVNSGDVYQPSFSCCKSQNNKDSNGCAVEGTTV 575


>08_02_1553 +
           27835320-27835364,27836853-27836966,27837062-27837457,
           27837751-27837822,27837957-27838082,27838164-27838244,
           27838364-27838558,27839018-27840013
          Length = 674

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 633 RARSSPDVRRPSNSVLSREQSSDSSHLPVHGRSVFF 526
           R+R++P    P+N+  S   +  S  L   G+S+FF
Sbjct: 592 RSRNNPAAPAPTNAAPSSSSTLPSERLTYSGQSIFF 627


>07_03_0435 +
           18182657-18183509,18184477-18184574,18184663-18184833,
           18185524-18185624,18185702-18185837,18186007-18186057,
           18186202-18186489,18186610-18186844,18186924-18187204,
           18187336-18187557
          Length = 811

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 578 NRAVIRPTFQCMGGAFSSFRSTKSPIAAMCQEFAIFVGLAIVLCT 444
           N  V+ PT   +G AF S+     P A  C E ++ + L ++LCT
Sbjct: 411 NPVVVAPTIAAVGLAFFSYGF---PQAGSCVEISMPLILLVLLCT 452


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,641,377
Number of Sequences: 37544
Number of extensions: 473426
Number of successful extensions: 1318
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)