Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0691
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15120.1 68417.m02323 VQ motif-containing protein contains PF...    31   0.97 
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi...    30   1.7  
At3g16340.1 68416.m02066 ABC transporter family protein similar ...    29   3.9  
At4g01130.1 68417.m00151 acetylesterase, putative similar to lan...    28   5.2  
At3g20910.1 68416.m02643 CCAAT-binding transcription factor (CBF...    28   6.8  
At1g13610.1 68414.m01597 expressed protein ; expression supporte...    28   6.8  
At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein ...    27   9.0  
At1g31090.1 68414.m03806 F-box family protein contains Pfam PF00...    27   9.0  

>At4g15120.1 68417.m02323 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 193

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = -2

Query: 614 TSAARATPSSPGNRAVIRPTFQCMGGA----FSSFRSTKSPIAAMCQEFAIFVGLAIVLC 447
           T+ +  +P SP NR V +PT +    +     + F +  +   AM Q+F           
Sbjct: 31  TATSADSPLSPDNRRVAKPTRRRSRASRRTPTTLFNTDTANFRAMVQQFTGGPSAVAFGS 90

Query: 446 TPASTASKTVDAGTLGVEICPW 381
           +P+S  S T    T GV   PW
Sbjct: 91  SPSSGFSLTSSDPTAGVSSSPW 112


>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 952

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 651 PSATPVRARSSPDVRRPSNSVLSREQSSDSSHLP 550
           P   P    S PD+RRP  S+ S   SS  S +P
Sbjct: 39  PPQPPEPPESPPDLRRPEKSIGSSSSSSSPSPIP 72


>At3g16340.1 68416.m02066 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1416

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 85  EKE*NLTFSRLTPH-ISVVLLKHALNRQNIISSACWDRLI*LSK-NWLRYLVK 237
           EK+ ++ + R   H  S+V  KH++ +  +    CWDR + L K N   Y+ K
Sbjct: 470 EKDLSVPYDRFKSHPASLVFKKHSVPKSQLFK-VCWDRELLLMKRNAFFYITK 521


>At4g01130.1 68417.m00151 acetylesterase, putative similar to
           lanatoside 15'-O-acetylesterase [Digitalis lanata]
           GI:3688284; contains InterPro Entry IPR001087 Lipolytic
           enzyme, G-D-S-L family
          Length = 382

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = +3

Query: 99  FNFQPAYSPHFGGLVEACVKSAKYHLKRMLGQTHLTFEELATLFSQIEAILNVGPSVLYP 278
           + F    +     L    V+  K +L +++GQ   T +E+  +  +   +LN+ P   YP
Sbjct: 170 YTFYIGQNDFTSNLASIGVERVKLYLPQVIGQIAGTIKEIYGIGGRTFLVLNLAPVGCYP 229

Query: 279 QVQMTYS 299
            +   Y+
Sbjct: 230 AILTGYT 236


>At3g20910.1 68416.m02643 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 303

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 433 VDAGVHNTIASPTKMANSWHIAA 501
           VD+ VH T++S     N WH AA
Sbjct: 17  VDSEVHGTVSSSINSLNPWHRAA 39


>At1g13610.1 68414.m01597 expressed protein ; expression supported
           by MPSS
          Length = 351

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 508 PQLQRCARSSPFLSGLQLCYVLQH 437
           P+L+     SPFLSGL++ Y ++H
Sbjct: 157 PRLRALVLHSPFLSGLRVMYPVKH 180


>At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 356

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -1

Query: 294 RSFGLEDKGQRGRRLRSPQFD*IA*PVLRKLNESVPTCA*DDILPI*RMLQ 142
           R+F L      G    SP+ D  + P+ + L+ S+ +C+ +D++P  R LQ
Sbjct: 203 RAFQLSISPVSGSPPMSPRADSESSPMTQSLSRSLGSCSINDVVPSFRNLQ 253


>At1g31090.1 68414.m03806 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 311

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 524 KKKTLLPCTGRWDESLLCSRERTELLGRRTSGLLRARTGVALG 652
           K  T   C  +  ES++C ++ TEL   R+S   R   GV  G
Sbjct: 25  KPITRFRCVSKLWESIICRQDFTELFHNRSSSNPRLLIGVIQG 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,060,119
Number of Sequences: 28952
Number of extensions: 354352
Number of successful extensions: 973
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)