Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0690
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    34   0.018
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.67 
SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc...    28   1.6  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    26   4.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   6.3  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   8.3  
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.3  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   8.3  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    25   8.3  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = -1

Query: 497 DGLVRVDHGHRGQNHAHQWWDFVKVAAG-YLQNLGVLVRISVDPAQ-LRDKILCFSTLFY 324
           DGL R+D   RG     +  D+VKV AG Y  + G++VRIS D    L D ++   T+F 
Sbjct: 506 DGL-RLDVPSRGLRKRFRHGDYVKVIAGKYKDDTGMVVRISKDEVTFLSDTLMTELTVFS 564

Query: 323 LEL 315
            +L
Sbjct: 565 RDL 567


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 509 YLDFNTGSYNVGKDILPECTVVLDTVLNMHVYDWWHPKYPHFDNKTP 649
           Y++ +T  Y + KD +P       T ++  V+D    KYP++  KTP
Sbjct: 531 YIETSTRVYEMPKDTIPSR---FKTSISTEVHDGRLKKYPYYHVKTP 574


>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 17  INKTTYALTKRESFWRSIYNRYCKNHPNLP 106
           +NK T A  K E  + SI   +  NHP LP
Sbjct: 160 VNKLTEAQDKLEELFPSIMADFQSNHPKLP 189


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -1

Query: 161 SPSGAVRTFGNCSLCAIYLVNLGDFYSTCCIWISKTTHAS 42
           SP      FGN     +Y    GD     CIW  KT + S
Sbjct: 347 SPFSISENFGNSVQAKLYGSGSGDCPEGYCIWYLKTLNDS 386


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 226 TFCCHRLNFLHEHVICVIQSPYHPLAQSVRL 134
           T CC  LNF++ H + + +   H L  S+ L
Sbjct: 285 TLCCFSLNFIY-HGLPICEKSKHILMSSINL 314


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 214 HRLNFLHEHVICVIQSPYHPLAQSVRLVTVLYAQSI 107
           H      E +ICVIQS  H  A S +  T    Q++
Sbjct: 160 HPNEVFKETLICVIQSAVHSQASSTKAQTQFLHQTL 195


>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 547 GHPAGVHGGFGHSSEHARLRLVAPQIPTF 633
           G   G+HGG     +   +R + P++P F
Sbjct: 89  GRELGIHGGAFKVRKEISIRSIPPELPPF 117


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 303 FKFKKLQIKERTKTQDFITELGRIDANPDQDTQVLQVT 416
           F+F+ L  KE  KT D + +    + +PD    VL+++
Sbjct: 174 FRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLS 211


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 62  RSIYNRYCKNHPNLPDR 112
           R+ YN +CKNH   P +
Sbjct: 42  RNAYNEHCKNHDQQPSQ 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,296
Number of Sequences: 5004
Number of extensions: 66177
Number of successful extensions: 198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)