Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0690
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0737 + 10820728-10821096,10821320-10821532,10821631-108217...    31   0.93 
08_01_0680 - 5958066-5960253,5960707-5961503                           30   1.6  
04_04_1115 + 31008213-31008707,31009385-31009689,31010848-310111...    28   6.5  
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974...    28   8.6  
06_01_0225 - 1727461-1728825                                           28   8.6  
03_02_0344 - 7654551-7656149                                           28   8.6  

>03_02_0737 +
           10820728-10821096,10821320-10821532,10821631-10821732,
           10821755-10821793,10821830-10821967,10822182-10822486,
           10822784-10822937,10823279-10823404
          Length = 481

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 507 GAGGWPCASGPWSPR 463
           G GG P A+GPWSPR
Sbjct: 47  GRGGLPAAAGPWSPR 61


>08_01_0680 - 5958066-5960253,5960707-5961503
          Length = 994

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -2

Query: 247  AGQLIRTTFCCHRLN--FLHEHVICVIQSPYHPLAQSVRLVTVLYA 116
            A  LIR +F CHR++  FL  H++ ++ S +      + L+  LYA
Sbjct: 935  ANSLIRHSFTCHRVSALFLLNHILAILFSKFILCISVLSLLFWLYA 980


>04_04_1115 +
           31008213-31008707,31009385-31009689,31010848-31011108,
           31011193-31011401,31011490-31011783,31011861-31011901,
           31011987-31012055,31012164-31012264,31012351-31012435,
           31012539-31012637,31012731-31012799,31012909-31013040,
           31013128-31013222,31013340-31013421
          Length = 778

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -1

Query: 194 RTRHMCDTKPVSPSGAVRTFGNCSLCAIYLVNLGDFYSTCCIWISKTTHASSERRSFCLY 15
           R RH C   P+   G++ + G C   AI   +L DF    C       + S+  RS CL 
Sbjct: 289 RKRHRCVVVPI---GSL-SIGFCRHRAILFKSLADFIGLPCRIAQGCKYCSAPHRSSCLV 344

Query: 14  R 12
           +
Sbjct: 345 K 345


>09_06_0061 + 20596360-20596618,20597039-20597158,20597329-20597462,
            20597578-20597730,20597816-20597927,20598022-20598352,
            20598524-20598737,20598842-20598931,20599669-20599924,
            20600029-20600141,20600733-20600831,20600915-20600980,
            20601018-20601167,20601278-20601368,20601710-20601749,
            20603888-20605247,20605478-20605507,20605834-20605885,
            20606264-20606397,20606513-20606665,20607089-20607202
          Length = 1356

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -1

Query: 224  LLLSSFELSSRTRHMCDTKPVSPSGAVRTFGNCSLCAIYLVNLGDFYSTCCIWISKTTH 48
            L+ +  E+  R R++  +   S S A    GN     ++  +L D+  +C I  SK TH
Sbjct: 1273 LIFTEEEVEYRVRNVLASVESSLSNASYLSGNPPEIVVWSASLYDYKISCAIDASKRTH 1331


>06_01_0225 - 1727461-1728825
          Length = 454

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 406 RTWVSWSGLASILPSSVIKSCVLVRSFIWSFLNLK*TAQ 290
           R WV+W  +  +L   VI  C ++   +WS  NL+  A+
Sbjct: 320 RAWVTWKQV--LLLVDVICCCAVLFPIVWSIKNLREAAR 356


>03_02_0344 - 7654551-7656149
          Length = 532

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 381 NPDQDTQVLQVTCRNFHEVPPLMGMILSSVTM 476
           NP +D  +L V C  F+  P L  MI++   M
Sbjct: 210 NPKRDVGILIVNCSLFNPTPSLSSMIINHYEM 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,064,460
Number of Sequences: 37544
Number of extensions: 476811
Number of successful extensions: 1333
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)