Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0690
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28016| Best HMM Match : F-box (HMM E-Value=0.15) 53 2e-07
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82) 30 2.2
SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2) 29 3.8
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2) 29 5.0
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 29 5.0
SB_3431| Best HMM Match : EGF (HMM E-Value=1.8e-08) 29 5.0
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_43413| Best HMM Match : Extensin_2 (HMM E-Value=4.3) 28 6.7
SB_20454| Best HMM Match : No HMM Matches (HMM E-Value=.) 24 9.5
>SB_28016| Best HMM Match : F-box (HMM E-Value=0.15)
Length = 397
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +3
Query: 273 KGSSVSWAVYFKFKKL--QIKERTKTQDFITELGRIDANPDQDTQVLQVTCRNFHEVPPL 446
KG W YFK K Q K RT T ++ + ++ NP+++ VL V C N+ PP+
Sbjct: 273 KGGKKVWIFYFKLTKRTGQKKPRTYTPEWFATVDDVNDNPEENNSVLSVVCMNYIPFPPV 332
Query: 447 MGMILSSVTMVHSHKAIHQ 503
+G++L+ V S HQ
Sbjct: 333 IGLVLTEVLTGLSAGMKHQ 351
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/73 (36%), Positives = 37/73 (50%)
Frame = +2
Query: 8 FAGINKTTYALTKRESFWRSIYNRYCKNHPNLPDRLRIENSYQTYGLRQRVIRALYHTYD 187
F+ I + T + +FW S YNR + LP LR + GLR RVIRAL+H YD
Sbjct: 178 FSLICRGTQMVINSSNFWLSFYNRLIPDPEKLPLELRPDRIKCRPGLRPRVIRALFHCYD 237
Query: 188 VFVKKVQTMTAEG 226
++Q + G
Sbjct: 238 PLSVRIQPNSDTG 250
>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
Length = 646
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 419 PQLSRSPTTDGHDSVLGDHGPLAQGHPPAP 508
P+ P T GHDS G+ G ++ PP P
Sbjct: 610 PESPPPPRTPGHDSSSGESGEISLPSPPTP 639
>SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
Length = 409
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = -2
Query: 190 HVICVIQSPYHPLAQSVRLVTVLYAQSIW*IWVIFTVP----VVYGSPKRLTLRQSVGRF 23
H+ + SPYH + T + S + I++I+T P ++Y SP + + S
Sbjct: 287 HIYIIYASPYHICIYASPYHTYIIYASPYNIYIIYTSPYYIYIIYASPYHIYIVYSSPYH 346
Query: 22 VYT 14
YT
Sbjct: 347 TYT 349
>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
Length = 939
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +2
Query: 413 NLPQLSRSPTTDGHDSVLGDHGPLAQGHPPAPYLDFNTGSYNVGKDILPECTVVLDTVLN 592
N P+ P T S D L Q H A +D N GK +LP VLD +++
Sbjct: 802 NDPRTRNDPRTRNDPSTRNDPRTLNQPHGIA-VMDKGKAEENTGKKVLPTQVNVLDEIVS 860
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 434 SPTTDGHDSVLGDHGPLAQGHPPAPYLDFNTGS 532
S +DG G GPL PP P LD+N S
Sbjct: 133 SAGSDGPKGEAGGPGPLGPIGPPGPILDYNDTS 165
>SB_3431| Best HMM Match : EGF (HMM E-Value=1.8e-08)
Length = 480
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 241 GPQEVVRYGFIRDLQCLGQFISNLRSSK*KSVLKHRILSRSWAGSTL 381
GP EV+ ++ + L + +S K + K R+LS SW L
Sbjct: 340 GPSEVLVNAYVEGVSVLHMIFNAKKSDKMSWMQKSRVLSSSWTDPAL 386
>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2143
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +2
Query: 437 PTTDGHDSVLGDHGPLAQGH-PPAPYLD 517
PT +GH+ H P GH PPA D
Sbjct: 510 PTANGHEPTSNGHEPTTNGHEPPANVCD 537
>SB_43413| Best HMM Match : Extensin_2 (HMM E-Value=4.3)
Length = 529
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 229 CVSTGPQEVVRYGFIRDLQCLGQFISNLRSSK*KSVLKHRILSRS 363
CVS P + +RDL C ISN R + ++K + L +S
Sbjct: 314 CVSPEPVVPIHSDMLRDLVCKAFCISNTRQLYLEKIVKEKHLPKS 358
>SB_20454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 24.2 bits (50), Expect(2) = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 435 LRESCGRLPAELGCLGQD*RRSC 367
L+++ GR+P LG+D R SC
Sbjct: 485 LKQTGGRIPENKDSLGRDRRDSC 507
Score = 21.8 bits (44), Expect(2) = 9.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 267 TIPDDLLRAS*YARPSAVIV*TFFT 193
T+PDD + + RP ++ V +FF+
Sbjct: 529 TVPDDKGKRNAKGRPMSMFVGSFFS 553
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,840,314
Number of Sequences: 59808
Number of extensions: 519720
Number of successful extensions: 1303
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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