Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0690
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.55 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.9  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 542 GKDILPECTVVLDTVLNMHVYDWWHPKY 625
           G  ++P CT      L+ +VY   HPKY
Sbjct: 308 GVTMIPACTCKAVACLDPYVYAISHPKY 335


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 449 GHDSVLGDHGPLAQGHPPAPYLDFNTGSYNVGKDILPECTVVLDTVL 589
           G DSV  DH    +  PP P LD++  S    +D+  +       VL
Sbjct: 307 GRDSV--DHVDFDEFLPPPPNLDYHDYSRQFPRDLTTQTVSTTADVL 351


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 617 PKYPHFDNKTPTCTEDDEVVPML 685
           PK+P  DN     TE    +P+L
Sbjct: 211 PKFPSMDNINGLSTESKADLPLL 233


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 480 GPWSPRTESCPSVVGLRESCGRL 412
           G WS + E   SVVGL    G L
Sbjct: 20  GMWSSKIEFILSVVGLAIGLGNL 42


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 480 GPWSPRTESCPSVVGLRESCGRL 412
           G WS + E   SVVGL    G L
Sbjct: 73  GMWSSKIEFILSVVGLAIGLGNL 95


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -1

Query: 215 SSFELSSRTRHMCDTKPVSPSGAVRTFGNCSLCAI--YLVNLGDFYSTCCIWISKTTHAS 42
           ++F LS +       K  + +  +   G   +C +  ++VNL   + + CIW  K   A+
Sbjct: 316 NNFSLSRKLAKFAKEKKAAKTLGI-VMGVFIICWLPFFVVNLWSGFCSQCIWQEKIVFAA 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,531
Number of Sequences: 438
Number of extensions: 4840
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)