Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0690
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48260.1 68414.m05390 CBL-interacting protein kinase 17 (CIPK...    33   0.19 
At2g14520.1 68415.m01625 CBS domain-containing protein contains ...    33   0.25 
At2g34520.1 68415.m04240 ribosomal protein S14 mitochondrial fam...    30   1.8  
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    29   2.4  
At4g04402.1 68417.m00635 two-component phosphorelay mediator, pu...    27   9.5  
At1g62990.1 68414.m07113 homeodomain transcription factor (KNAT7...    27   9.5  

>At1g48260.1 68414.m05390 CBL-interacting protein kinase 17 (CIPK17)
           identical to CBL-interacting protein kinase 17
           [Arabidopsis thaliana] gi|14571553|gb|AAK64513
          Length = 432

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 21/75 (28%), Positives = 38/75 (50%)
 Frame = +2

Query: 488 QGHPPAPYLDFNTGSYNVGKDILPECTVVLDTVLNMHVYDWWHPKYPHFDNKTPTCTEDD 667
           +G PP P    + G+  + K +L    V   T+  +  +DW+   Y      TP+  +DD
Sbjct: 226 KGDPPIPRW-ISLGAKTMIKRMLDPNPVTRVTIAGIKAHDWFKHDY------TPSNYDDD 278

Query: 668 EVVPMLKKDFFAIKE 712
           + V ++++D F +KE
Sbjct: 279 DDVYLIQEDVFMMKE 293


>At2g14520.1 68415.m01625 CBS domain-containing protein contains
           Pfam profiles PF00571: CBS domain, PF01595: Domain of
           unknown function
          Length = 423

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 327 KERTKTQDFITELGRIDANPDQDTQVLQVTCRNFHEVPPLMGM--ILSSVTMVHSHKAI 497
           ++RT     +     +  NPD++ QV  VT R    VP  + +  IL+     HSH A+
Sbjct: 246 EQRTNIIGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMAV 304


>At2g34520.1 68415.m04240 ribosomal protein S14 mitochondrial family
           protein identical to ribosomal protein S14 {Arabidopsis
           thaliana} NCBI_gi:4583554
          Length = 164

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +2

Query: 38  LTKRESFWRSIYNRYCKNHPNLPDRLRIENSYQTYGLRQRVIRALYHTYDVFVKKVQTMT 217
           L  R    R +Y  +CK+ P+LP  +R +N Y+   L +    A      VF  + +++T
Sbjct: 79  LAARFELRRKLYKAFCKD-PDLPSEMRDKNRYKLSKLPRNSAFARIRNRCVFTGRSRSVT 137

Query: 218 AEGRAYQLARR 250
              R  ++  R
Sbjct: 138 ELFRVSRIVFR 148


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
           TBP (TATA-binding protein) -interacting protein 120
           (TIP120); contains TIGRFAM profile TIGR01612:
           reticulocyte binding protein
          Length = 1866

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -1

Query: 500 VDGLVRVDHGHR-GQNHAHQWWDFVKVAAGYLQNLGVLVRISVDPAQLRDKILCFSTLFY 324
           ++GL   + G     NH H++  F+++    L+    L+    D +++R + L F +  Y
Sbjct: 570 LEGLFLKEEGRSIVSNHDHKYPKFIEMLEYILKQQPKLL----DSSEMRSQKLLFPSQVY 625

Query: 323 LELLKFEINC 294
           L ++KF + C
Sbjct: 626 LVMIKFLVKC 635


>At4g04402.1 68417.m00635 two-component phosphorelay mediator,
           putative similar to ATHP1 [Arabidopsis thaliana]
           GI:4156241, ATHP2 [Arabidopsis thaliana] GI:4156243
          Length = 167

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 512 LDFNTGSYNVGKDILPECTVVLDTVL 589
           LD +TG+ + G+  L  CT+V DTVL
Sbjct: 67  LDKSTGTVDFGQMKLFSCTLVFDTVL 92


>At1g62990.1 68414.m07113 homeodomain transcription factor (KNAT7)
           contains Pfam profiles:  PF03789 ELK domain, PF03790
           KNOX1 domain, PF03791 KNOX2 domain; similar to homeobox
           protein HD1 SP:P46606 from [Brassica napus]; identical
           to cDNA  homeodomain transcription factor KNAT7 (KNAT7)
           GI:11878229
          Length = 291

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 508 RRWWMALCEWTMVTEDRIMPISGGTS*KLRQV 413
           + WW   C+W   TED    +   T  +L+Q+
Sbjct: 232 KNWWQQHCKWPYPTEDDKAKLVEETGLQLKQI 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,509,828
Number of Sequences: 28952
Number of extensions: 365349
Number of successful extensions: 1018
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)