Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0689
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   140   2e-34
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   140   2e-34
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    38   0.002
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.72 
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    29   0.95 
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   3.8  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    26   5.1  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    26   6.7  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    25   8.9  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   8.9  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  140 bits (339), Expect = 2e-34
 Identities = 69/91 (75%), Positives = 77/91 (84%)
 Frame = +3

Query: 252 SGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVL 431
           +GR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVL
Sbjct: 52  AGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVL 111

Query: 432 VTAIINSGPREDSTRIGRAGTVRRQALMFHP 524
           V A+   GPREDSTRIG AGTVRRQA+   P
Sbjct: 112 VDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142



 Score = 98.7 bits (235), Expect = 8e-22
 Identities = 46/57 (80%), Positives = 54/57 (94%)
 Frame = +2

Query: 536 NQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 706
           NQA+ L+  GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 147 NQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203



 Score = 35.1 bits (77), Expect = 0.011
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +1

Query: 88  AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAAGMH 267
           A S++ + +SL +      IKLF ++    V+V D+SL DYI++     + LPH+A    
Sbjct: 2   AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56

Query: 268 T 270
           T
Sbjct: 57  T 57


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  140 bits (339), Expect = 2e-34
 Identities = 69/91 (75%), Positives = 77/91 (84%)
 Frame = +3

Query: 252 SGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVL 431
           +GR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVL
Sbjct: 52  AGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVL 111

Query: 432 VTAIINSGPREDSTRIGRAGTVRRQALMFHP 524
           V A+   GPREDSTRIG AGTVRRQA+   P
Sbjct: 112 VDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142



 Score = 98.7 bits (235), Expect = 8e-22
 Identities = 46/57 (80%), Positives = 54/57 (94%)
 Frame = +2

Query: 536 NQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 706
           NQA+ L+  GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 147 NQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203



 Score = 32.7 bits (71), Expect = 0.058
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +1

Query: 109 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAAGMHT 270
           T SL     + E   IKLF ++    V+V D+SL DYI++     + LPH+A    T
Sbjct: 3   TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQT 57


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 23/53 (43%), Positives = 28/53 (52%)
 Frame = +3

Query: 300 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 458
           V+ L N +M     +GKK  A +IV  A  II   TGENP+ VL  AI    P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 359 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 457
           G TYC  C     L+NW K S S   C  +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 552 SQIAWLTRRKGETSTLDDELYP 487
           SQ AWL+R KG  S L   +YP
Sbjct: 445 SQAAWLSREKGVASELQSLVYP 466


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 633 QLRVHLTPTPSKRRTSWSVLLNPTV 707
           Q ++H  P P +RR S + L NP++
Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSL 148


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 432 VTAIINSGPREDSTRIGRAGT-VRRQALMFHPCAESTKQSGFCAQVHVRLHSEILKQSQS 608
           VT+    G R  S    + G   RRQA M+   +   +++ +  + H R  +  +K  QS
Sbjct: 340 VTSYSRPGRRPRSMTAPKGGARTRRQAAMYSNSSSGIRETMYDLKPHRRKDAAEMKFCQS 399

Query: 609 VLQ 617
           VL+
Sbjct: 400 VLK 402


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 308 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 430
           PYK+   +  + W +  G+TY  + +  + L   R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +1

Query: 124 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAA 258
           + ADI  +  FGR    ++++++  +   I+V+EKYAK  P   A
Sbjct: 7   KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGA 47


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = +1

Query: 187 SDMSLQDYISVKEKYAKYLPHSAAGMHTSVSVK 285
           SDM ++ + ++K +Y+K +P++   + T  ++K
Sbjct: 706 SDMGMEKFFNIKCRYSKLVPNTVVLVTTVKALK 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,762
Number of Sequences: 5004
Number of extensions: 62327
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)