Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0689
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 157 9e-39
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 156 2e-38
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 5.3
03_06_0610 + 35052455-35053429,35054936-35055511 29 5.3
11_01_0062 - 476027-476044,476791-477195,477287-477574,477653-47... 28 7.0
12_02_0611 + 21118777-21119066,21119501-21119594,21119742-211201... 28 9.3
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 28 9.3
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 157 bits (381), Expect = 9e-39
Identities = 74/91 (81%), Positives = 81/91 (89%)
Frame = +3
Query: 252 SGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVL 431
+GRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+
Sbjct: 48 AGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVI 107
Query: 432 VTAIINSGPREDSTRIGRAGTVRRQALMFHP 524
V AIINSGPRED+TRIG AG VRRQA+ P
Sbjct: 108 VDAIINSGPREDATRIGSAGAVRRQAVDISP 138
Score = 107 bits (256), Expect = 1e-23
Identities = 51/57 (89%), Positives = 56/57 (98%)
Frame = +2
Query: 536 NQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 706
NQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 143 NQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 199
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/39 (61%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Frame = +1
Query: 142 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSA 255
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+A
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTA 48
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 156 bits (379), Expect = 2e-38
Identities = 73/91 (80%), Positives = 81/91 (89%)
Frame = +3
Query: 252 SGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVL 431
+GRY+ KRFRKAQCP+VERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+
Sbjct: 49 AGRYSAKRFRKAQCPLVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVI 108
Query: 432 VTAIINSGPREDSTRIGRAGTVRRQALMFHP 524
V AIINSGPRED+TRIG AG VRRQA+ P
Sbjct: 109 VDAIINSGPREDATRIGSAGAVRRQAVDISP 139
Score = 107 bits (256), Expect = 1e-23
Identities = 51/57 (89%), Positives = 56/57 (98%)
Frame = +2
Query: 536 NQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 706
NQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 144 NQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 200
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/38 (57%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Frame = +1
Query: 145 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSA 255
+KLF WS DVQV+D+SL DY++V K+A YLPH+A
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTA 49
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 77 T*PRQAAWLWKPCLYHKPPTF 139
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -3
Query: 195 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYFSITK 28
++ ++V TP A L F GGLW +G + AAC+ V++ V+ DW+ +
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475
Query: 27 *K 22
K
Sbjct: 476 AK 477
>11_01_0062 -
476027-476044,476791-477195,477287-477574,477653-477830,
478005-478133,478531-478729,478832-478970,479130-479195,
480459-480580,480672-480742,480819-480903,481335-481453,
481577-481687,481945-482117,482375-482446,482768-482862,
483361-483450,483550-483646
Length = 818
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 600 IVLIFLNAASRAPVHKSQIAWLTRRKGETSTLDDELYPH 484
+VL +N R V++ I W+ + GET TL++ L H
Sbjct: 149 VVLTTMNLVDR--VYEGNILWIDPKIGETGTLEEMLALH 185
>12_02_0611 +
21118777-21119066,21119501-21119594,21119742-21120182,
21120267-21120866
Length = 474
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 372 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQALMFHPCAESTKQSG 551
++H + + LL NP++ + I + +E +GRAG ++++ + C ES G
Sbjct: 75 IRHGWSMRDLLL--NPIEEVA---IPARGKEKVGEVGRAGAMQKEEIKCFNCGESGHHQG 129
Query: 552 F 554
F
Sbjct: 130 F 130
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +1
Query: 76 DVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 246
++ G +VV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 215 EIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,863,848
Number of Sequences: 37544
Number of extensions: 407393
Number of successful extensions: 1005
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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