Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0689
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   154   5e-38
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   154   5e-38
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   154   5e-38
At1g59590.1 68414.m06702 expressed protein                             28   7.7  

>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  154 bits (374), Expect = 5e-38
 Identities = 72/91 (79%), Positives = 81/91 (89%)
 Frame = +3

Query: 252 SGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVL 431
           +GRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV+
Sbjct: 56  AGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVI 115

Query: 432 VTAIINSGPREDSTRIGRAGTVRRQALMFHP 524
           + AI+NSGPRED+TRIG AG VRRQA+   P
Sbjct: 116 IDAIVNSGPREDATRIGSAGVVRRQAVDISP 146



 Score =  107 bits (256), Expect = 1e-23
 Identities = 51/57 (89%), Positives = 56/57 (98%)
 Frame = +2

Query: 536 NQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 706
           NQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 151 NQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
 Frame = +1

Query: 124 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSA 255
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+A
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTA 56


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  154 bits (374), Expect = 5e-38
 Identities = 72/91 (79%), Positives = 81/91 (89%)
 Frame = +3

Query: 252 SGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVL 431
           +GRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV+
Sbjct: 56  AGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVI 115

Query: 432 VTAIINSGPREDSTRIGRAGTVRRQALMFHP 524
           + AI+NSGPRED+TRIG AG VRRQA+   P
Sbjct: 116 IDAIVNSGPREDATRIGSAGVVRRQAVDISP 146



 Score =  107 bits (256), Expect = 1e-23
 Identities = 51/57 (89%), Positives = 56/57 (98%)
 Frame = +2

Query: 536 NQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 706
           NQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 151 NQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
 Frame = +1

Query: 124 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSA 255
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+A
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTA 56


>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  154 bits (374), Expect = 5e-38
 Identities = 72/91 (79%), Positives = 81/91 (89%)
 Frame = +3

Query: 252 SGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVL 431
           +GRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV+
Sbjct: 56  AGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVI 115

Query: 432 VTAIINSGPREDSTRIGRAGTVRRQALMFHP 524
           + AI+NSGPRED+TRIG AG VRRQA+   P
Sbjct: 116 IDAIVNSGPREDATRIGSAGVVRRQAVDISP 146



 Score =  107 bits (258), Expect = 6e-24
 Identities = 52/57 (91%), Positives = 56/57 (98%)
 Frame = +2

Query: 536 NQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 706
           NQAI+LL TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 151 NQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 22/39 (56%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
 Frame = +1

Query: 142 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSA 255
           E+KLF RWS  DV V+D+SL DYI V+  K+A ++PH+A
Sbjct: 18  EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTA 56


>At1g59590.1 68414.m06702 expressed protein
          Length = 211

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 638 KGSSNSYAIKKKDELERVAKSNR 706
           +GSS SYA+KKKD   +++  NR
Sbjct: 174 RGSSPSYAMKKKDFARKLSIENR 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,055,189
Number of Sequences: 28952
Number of extensions: 329430
Number of successful extensions: 768
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)