Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0688
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845... 29 2.8
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916 29 3.8
04_03_0150 + 11877714-11878487,11880928-11881245 29 3.8
03_02_0564 - 9477118-9477200,9477617-9477687,9477799-9477944,947... 29 3.8
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 29 3.8
11_06_0156 + 20748472-20748951 29 5.0
10_02_0061 - 4812903-4812940,4813140-4813536 29 5.0
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 29 5.0
10_08_0019 - 14167952-14171059 28 6.6
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 8.7
04_04_1378 + 33105564-33105634,33105786-33106253,33106558-331065... 28 8.7
04_04_1034 + 30275708-30276022,30276354-30276440,30276833-302768... 28 8.7
04_01_0253 - 3358090-3359052 28 8.7
>09_04_0259 -
16182190-16182360,16183185-16183262,16184431-16184586,
16184913-16185092,16185875-16186027
Length = 245
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 66 QKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPG 167
++ PS T T+ V PGP V D RKPL+ T PG
Sbjct: 182 KEKPSIGTVTA--VGPGPLVEDGSRKPLSIT-PG 212
>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
Length = 259
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 401 LDIGGGDPGASGEDVSCAKSEGELTSLGSPG 309
+++ G D S SC S+G ++ GSPG
Sbjct: 169 MEVDGNDDSDSSSPTSCVSSDGRSSAGGSPG 199
>04_03_0150 + 11877714-11878487,11880928-11881245
Length = 363
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -1
Query: 706 GAATVRAVNTEGGGNDHIVSKRA----GADGVGNDLE 608
G T+ V ++GGG +V R GADG+G+D +
Sbjct: 289 GRGTIGGVASDGGGQGVVVLTRGSLEGGADGIGDDFD 325
>03_02_0564 -
9477118-9477200,9477617-9477687,9477799-9477944,
9478051-9478128,9478284-9478388,9478647-9478769,
9479085-9479171,9479272-9479352,9479443-9479512,
9479604-9479662,9479763-9479831,9479912-9479962,
9480063-9480107,9480203-9480276,9480544-9480667,
9480773-9480940
Length = 477
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 578 LPKQHRRSFRSRQPRPKYQQSCCSTG*VDALDVV 477
LP HR SFR+ PRP + G + A ++
Sbjct: 15 LPHHHRSSFRTSSPRPSRMVCAAAEGFISAAPIL 48
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +3
Query: 60 SWQKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPGLWVVLPQTLVLTPI 209
+W K P N V+PG ++DA P +PGL P TL TP+
Sbjct: 36 AW-KRPGNGAAVPVVVAPGSPIMDADSWP---ALPGLASPPPTTLTPTPM 81
>11_06_0156 + 20748472-20748951
Length = 159
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 584 CWLPKQHRRSFRSRQPRPKY 525
CWLP+ RRS R R R K+
Sbjct: 6 CWLPRACRRSMRHRSCRTKF 25
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 42 WRWRPWSW---QKSPSNSTTTSRSVSPGPRVLDAPRKP 146
WRWR W W + ++ST S++ G R+L R P
Sbjct: 41 WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 254 RWKFCHSSVRSQVQQDGGEHQRLRQNHPQSW 162
R + HS GG HQR R +HP +W
Sbjct: 543 RHRHGHSHGDHHHHYHGGHHQRRRHHHPPAW 573
>10_08_0019 - 14167952-14171059
Length = 1035
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 265 KELRDGSSAIRQCDHKSSKMGVSTSVCGRTTHNPGTVEV 149
K+ R ++ IR C H+ ++GV ++ G NP VE+
Sbjct: 31 KQWRKATNVIRGC-HRLLRLGVLSAAAGIMRRNPSYVEI 68
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 331 SSPSLLAQLTSSPEAPGSPPP 393
SS S + +SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
>04_04_1378 +
33105564-33105634,33105786-33106253,33106558-33106583,
33106741-33106771,33106890-33106977,33107094-33107338,
33107339-33107383,33107530-33107621,33107718-33107920,
33108215-33108496
Length = 516
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 718 VSAAGAATVRAVNTEGGGNDHIVSKRAGADGVGNDLEAHLAF 593
+S +A + N +GGG+D I G G G+D +AF
Sbjct: 369 LSLGSSAGSKRGNVDGGGDDEITG--GGGGGAGSDQRVPMAF 408
>04_04_1034 +
30275708-30276022,30276354-30276440,30276833-30276874,
30276983-30277027,30278826-30278891,30278956-30279012,
30279286-30279435,30279849-30279926,30280053-30280159,
30280261-30280291
Length = 325
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 715 SAAGAATVRAVNTEGGGNDHIVSKRAGADG 626
+AAG AT R + G++ S R G+DG
Sbjct: 12 AAAGRATARTTGSHARGSNGFASGRGGSDG 41
>04_01_0253 - 3358090-3359052
Length = 320
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 724 RRVSAAGAATVRAVNTEGGGNDHIVSKRAGADGVGN 617
RR+ AAGA E DH +RAG G G+
Sbjct: 231 RRLEAAGAEKREGRRRERASGDHRAKRRAGRGGGGS 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,002,868
Number of Sequences: 37544
Number of extensions: 409927
Number of successful extensions: 2039
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2037
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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