Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0688
(727 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10327| Best HMM Match : Trypsin (HMM E-Value=0) 38 0.008
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_48048| Best HMM Match : Trypsin (HMM E-Value=3.64338e-44) 33 0.24
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0) 31 0.72
SB_18510| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 29 2.9
SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_7929| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_36834| Best HMM Match : Rap_GAP (HMM E-Value=0.00045) 28 6.7
SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 865
Score = 37.9 bits (84), Expect = 0.008
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 SSLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGSYNMDTLHN 437
+SLLT ++TAAHC T A +TL G + G S ++ H ++M + N
Sbjct: 268 ASLLTPGWALTAAHCL-TLSDDASDYTLVAGAHQRENDGQVFGISKIRKHKGFSMVHVRN 326
Query: 438 DVAIIN-HNHVGFTNNIQRINLAS 506
DVA++ +V ++ + I L S
Sbjct: 327 DVALLKLSTYVQLSDKVGTICLPS 350
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 557 TSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDS 721
+SD + A+ Q+ +V L + C T G V S +C G+ G S C+GDS
Sbjct: 422 SSDQHTLADKLQQSKVPL--VNYTTCRSTNGATVDENSMICAGGA-GSSACNGDS 473
>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 35.9 bits (79), Expect = 0.033
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +3
Query: 261 SLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQ---MHGSYNMDTL 431
SL+++T VTAAHC R + Q+ + +G N T NV+ H YN L
Sbjct: 505 SLVSSTWVVTAAHC-VARSSNPAQYQIIVGEHNRNVNEVTEETLNVKKVIAHPQYNNPRL 563
Query: 432 HNDVAII 452
ND+A+I
Sbjct: 564 SNDIALI 570
>SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1059
Score = 34.3 bits (75), Expect = 0.10
Identities = 41/160 (25%), Positives = 60/160 (37%), Gaps = 9/160 (5%)
Frame = +3
Query: 63 WQKSPSNSTTTSRSVSPGPRVLDAPR-KPLTSTVP-----GLWVVLPQTLVLTPILLDL* 224
W + + SRS +P P +L + PLT+T P L ++ LT + +
Sbjct: 704 WGQEQTQEPLASRSATPSPVILQSMGVAPLTTTTPVSQGCESQSALTNSVTLTNLATNT- 762
Query: 225 SH*RMAELPSRSSLLTNTRSVTAAH--CWRTRRAQARQFTLALGTANIFSGGTRVTTSNV 398
H R ++ T T VT + + A Q L AN + VT +N
Sbjct: 763 CHVRPLNQVTQEICATPTSHVTDTNKVTHASHVTLASQVALPYQVANQVTHSNHVTLANQ 822
Query: 399 QMHGSYNMDTLHNDVAIINH-NHVGFTNNIQRINLASGAT 515
H N TL N V NH H G + + A+ T
Sbjct: 823 VTH--VNHVTLANQVTHANHVTHAGQVTHANHVTFANQVT 860
>SB_48048| Best HMM Match : Trypsin (HMM E-Value=3.64338e-44)
Length = 348
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 596 RQVSLQVITNAVCARTFGNNVIIASTLCV-DGSNGRSTCSGDS 721
R + ++ N VC R+ +N T C DG G TC GDS
Sbjct: 249 RHSAFEIQPNDVCDRSTRHNFNATVTFCAGDGKGGNDTCHGDS 291
>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
Length = 1019
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +3
Query: 261 SLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTR----VTTSNVQMHGSYNMDT 428
SL+ + +TAAHC ++R + + LG + T + S + H +YN T
Sbjct: 420 SLIHSNWVLTAAHCISSKRPA--EVVVRLGAHSRLGSLTTDMQDIKVSAIITHSNYNSRT 477
Query: 429 LHNDVAII 452
++ND+A++
Sbjct: 478 MYNDIALL 485
>SB_18510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +3
Query: 249 PSRSSLLTNTRSVTAAHCWRTRRAQARQFTLALGTANI--FSGGTRVTTSNVQMHGSYNM 422
PS L N + C + +L+ T+ I S G ++ +N HG +
Sbjct: 332 PSNDINLENQVNPRNEICMVNEACPNNELSLSNRTSPIKHVSLGKKIIPNNQSKHGHRKL 391
Query: 423 DTLHNDVAIINHNHVGFTNNIQRINLASGATTLLVLGP 536
+++++ ++ + +V FT + INL T LV P
Sbjct: 392 KRINSNMNLVKYENVSFTMLLIIINLFMCYTVYLVFLP 429
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 93 TSRSVSPGPRVLDAPRKPL 149
TS P PRVLD+PRKPL
Sbjct: 379 TSLLAYPTPRVLDSPRKPL 397
>SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 842
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 76 GLFCHDHGRQRHQYCCEDLHDYYQL 2
G FCH H R CC+DL Y +
Sbjct: 601 GSFCHIHPTDRFAVCCKDLLSSYTI 625
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 75 PSNSTTTSRSVSPGPRVLDAPRKPLTSTVPGL 170
PS STT++ + P P P KP ST PG+
Sbjct: 1335 PSPSTTSTTPIKPSPST--TPIKPSPSTTPGV 1364
>SB_7929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 60 SWQKSPSNSTTTSRSVSPG-PRVLDAPRKPLTSTVP 164
S+ K SNS T S S SPG P VL+ P +S P
Sbjct: 14 SYPKRNSNSHTASNSCSPGDPLVLERPPPRWSSNSP 49
>SB_36834| Best HMM Match : Rap_GAP (HMM E-Value=0.00045)
Length = 545
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 63 WQKSPSN-STTTSRSVSPGPRVLDAPRKPLTSTVPGLWVVLPQTL 194
+ K PS SR SP P L P PL + + ++ QTL
Sbjct: 414 YHKQPSTFEEFASRVFSPAPNTLSRPSTPLGTAAEAMTIMRTQTL 458
>SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 249 PSRSSLLTN-TRSVTAAHCWRTRRAQARQFTLALGTANIFSG 371
PS + ++ TR+ A HC R RA AR L + FSG
Sbjct: 775 PSEADVIRRITRNELALHCRRKTRAVARMSNLISALLDTFSG 816
>SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +1
Query: 550 RKDLRC---CFGSQQPTKTPSEPPGHYQRRLRPHVWKQCDHC 666
R++ +C C+G + +P PP RL W+ CD C
Sbjct: 279 RRNHKCNNLCYGCGEQECSPLVPPAEQDHRLE---WQYCDEC 317
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,314,166
Number of Sequences: 59808
Number of extensions: 420392
Number of successful extensions: 1833
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1829
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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