Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0688
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.73 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.96 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   3.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 239  HSSVRSQVQQDGGEHQRLRQNHPQSWYRRSQR 144
            HSS ++Q QQ   + Q+ +Q  PQ   ++ Q+
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQ 1526



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -3

Query: 380 PGAS---GEDVSCAKSEGELTSLGSPG 309
           PG S   GE  S A ++G  T+  SPG
Sbjct: 893 PGCSSKNGEPTSAAFAQGFATAASSPG 919



 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 606  ASRSLPTPSAPARLETM*SLPPPS 677
            AS   P P  P R+ T+   P PS
Sbjct: 1359 ASGGRPVPERPERVPTVDLSPSPS 1382


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 211 CWTCDRTDEWQNFH 252
           CW CD+ +E++  H
Sbjct: 467 CWVCDQCEEYEYVH 480


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 66  QKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPGLWVVLPQTLVLT 203
           Q+S S+      S +  PR L A     TST P        TLVL+
Sbjct: 810 QQSSSDYLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAATLVLS 855


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 190 VCGRTTHNPGTVEVSGFLGASKTLGPGDTDLD 95
           VCGR   N  TV  +  L    ++G GDT  D
Sbjct: 125 VCGRFYGNIQTVXNNWLLLEGHSIGIGDTIAD 156


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +1

Query: 211 CWTCDRTDEWQ 243
           CW CD+ +E++
Sbjct: 557 CWVCDQCEEYE 567


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 300 CWRTRRAQARQFTLALGTANI 362
           CW TR+    Q    +GT+N+
Sbjct: 459 CWDTRKEYIPQNLGVIGTSNL 479


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 160 TVEVSGFLGASKTLGPGDTDLDVVV 86
           T +V G +GA   +G  D D D ++
Sbjct: 108 TGDVHGVIGAGHWIGDHDVDKDELI 132


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 576 EPTTNKNAK*ASRS 617
           EP TNKN K  SRS
Sbjct: 239 EPGTNKNGKFFSRS 252


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 411 SYNMDTLHNDVAIINHNHVGFTNN 482
           S + +T+HN+    N+N+  + NN
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNN 106


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 411 SYNMDTLHNDVAIINHNHVGFTNN 482
           S + +T+HN+    N+N+  + NN
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNN 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,258
Number of Sequences: 438
Number of extensions: 3833
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)